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authorMunyoki Kilyungi2026-04-20 10:12:30 +0300
committerMunyoki Kilyungi2026-04-20 10:12:30 +0300
commitb0ef58eaff0e5966dc1dafc6abba8e42e3db1fe2 (patch)
tree93a32a0727513d7e770c269777c0aa12cb8336d1 /examples/probesets-experiment-metadata.scm
parent7f7272be9e0c43a2b80ccecb4055cec58b888514 (diff)
downloadgn-transform-databases-b0ef58eaff0e5966dc1dafc6abba8e42e3db1fe2.tar.gz
Add trait page link for probesets and phenotypes. HEAD master
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/probesets-experiment-metadata.scm')
-rwxr-xr-xexamples/probesets-experiment-metadata.scm7
1 files changed, 7 insertions, 0 deletions
diff --git a/examples/probesets-experiment-metadata.scm b/examples/probesets-experiment-metadata.scm
index 83a8ead..4bab425 100755
--- a/examples/probesets-experiment-metadata.scm
+++ b/examples/probesets-experiment-metadata.scm
@@ -30,6 +30,13 @@
     ;;        (format #f "gnd:~a.json"
     ;;                (field ("CONCAT(ProbeSetFreeze.Name, '_', ProbeSet.Name)"
     ;;                        PublishFreeze))))) )
+    (set gnt:has_trait_page
+         (string->symbol
+          (format #f "<https://genenetwork.org/show_trait?trait_id=~a&dataset=~a>"
+                  (field ProbeSet Name)
+                  ;; GTEx_Lung _0414
+                  (uri-encode
+                   (field ProbeSetFreeze Name ProbeSetFreezeName)))))
     (set gnt:has_probeset (string->identifier "probeset" (field ProbeSet Name ProbeSetName)))
     (set dcat:isPartOf (string->identifier "dataset" (field ProbeSetFreeze Name ProbeSetFreezeName)
                                            #:separator "_"))