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| author | Munyoki Kilyungi | 2026-02-18 11:03:48 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-02-18 11:03:48 +0300 |
| commit | 2091c1c812912755d9cd67723f1ba45a6666de5d (patch) | |
| tree | 0df37da679724fbffbcd82cceb7fe3337ce790d8 /examples/phenotype-datasets.scm | |
| parent | f5e0df7a66f4dbecb27c8e4f41ac760746d6c9de (diff) | |
| download | gn-transform-databases-2091c1c812912755d9cd67723f1ba45a6666de5d.tar.gz | |
Only transform datasets with public > 0 and confidentiality < 1.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/phenotype-datasets.scm')
| -rwxr-xr-x | examples/phenotype-datasets.scm | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/examples/phenotype-datasets.scm b/examples/phenotype-datasets.scm index c8657fc..c005621 100755 --- a/examples/phenotype-datasets.scm +++ b/examples/phenotype-datasets.scm @@ -18,7 +18,7 @@ (tables (Species (inner-join InbredSet "ON InbredSet.SpeciesId = Species.Id") (inner-join PublishFreeze "ON PublishFreeze.InbredSetId = InbredSet.Id")) - "WHERE PublishFreeze.public > 0 AND Species.Name != 'monkey' GROUP BY Species.Name, PublishFreeze.ShortName") + "WHERE PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1 AND Species.Name != 'monkey' GROUP BY Species.Name, PublishFreeze.ShortName") (triples (string->identifier "set" (field InbredSet Name InbredSetName) #:separator "_") (multiset gnt:has_phenotype_data (map (cut string->identifier "dataset" <> #:separator "_") @@ -34,7 +34,7 @@ (inner-join PublishFreeze "ON PublishFreeze.InbredSetId = InbredSet.Id") (inner-join Publication "ON Publication.Id = PublishXRef.PublicationId") (inner-join Phenotype "ON Phenotype.Id = PublishXRef.PhenotypeId")) - "WHERE InbredSet.public > 0") + "WHERE InbredSet.public > 0 AND PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1") (triples (string->identifier "dataset" (field PublishFreeze Name) #:separator "_") (set gnt:has_phenotype_trait (let ((post-abbrev (blank-p (field Phenotype Post_publication_abbreviation))) |