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| author | Munyoki Kilyungi | 2023-12-19 19:12:50 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-12-22 11:53:22 +0300 |
| commit | da5aa39b9791e697fd84cf2d4f8c881bac55d67a (patch) | |
| tree | 41a5e83978131530c56e7c6c151e32d89556e417 /examples/genelist.scm | |
| parent | 203442c692f205dca37a9f32494e2e71907a58e6 (diff) | |
| download | gn-transform-databases-da5aa39b9791e697fd84cf2d4f8c881bac55d67a.tar.gz | |
Use gnt:geneSymbol instead of rdfs:label/gnt:symbol.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/genelist.scm')
| -rwxr-xr-x | examples/genelist.scm | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/examples/genelist.scm b/examples/genelist.scm index 78df9d7..2d94a3b 100755 --- a/examples/genelist.scm +++ b/examples/genelist.scm @@ -84,11 +84,11 @@ "gene" (regexp-substitute/global #f "[^A-Za-z0-9:]" (string-trim-both - (field GeneList GeneSymbol)) + (field ("CONCAT_WS('_', GeneSymbol, GeneID, AlignID)" GENE_UID))) 'pre "_" 'post) #:proc (lambda (x) x)) (set rdf:type 'gnc:GeneSymbol) - (set rdfs:label (field GeneList GeneSymbol)) + (set gnt:geneSymbol (field GeneList GeneSymbol)) (set dct:description (sanitize-rdf-string (field GeneList GeneDescription))) (set gnt:hasGeneId (ontology 'gene: (field GeneList GeneId))) (set dct:references |