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author | Munyoki Kilyungi | 2023-07-19 14:28:15 +0300 |
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committer | Munyoki Kilyungi | 2023-07-21 14:36:41 +0300 |
commit | ddb909bbe6ee37eb19e5c161a6ceb8eabe88561c (patch) | |
tree | f48d05de98a5c58a998ab571daf44c6cb7834193 /examples/dump-species-metadata.scm | |
parent | 1d38755284196e62b2b16eda9cfaecd20e0c9a42 (diff) | |
download | gn-transform-databases-ddb909bbe6ee37eb19e5c161a6ceb8eabe88561c.tar.gz |
Rename 'gn-id' prefix to 'gn'
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/dump-species-metadata.scm')
-rwxr-xr-x | examples/dump-species-metadata.scm | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm index 48fd425..41d5847 100755 --- a/examples/dump-species-metadata.scm +++ b/examples/dump-species-metadata.scm @@ -29,7 +29,7 @@ (string->identifier "" (field Species FullName) #:separator "" #:proc string-capitalize-first) - (set rdf:type 'gn-id:species) + (set rdf:type 'gn:species) (set gn-term:name (field Species SpeciesName)) (set gn-term:displayName (field Species MenuName)) (set gn-term:binomialName (field Species FullName)) @@ -53,7 +53,7 @@ 'pre "_" 'post) #:separator "" #:proc string-capitalize-first) - (set rdf:type 'gn-id:strain) + (set rdf:type 'gn:strain) (set gn-term:strainOfSpecies (string->identifier "" (field Species FullName) #:separator "" @@ -68,7 +68,7 @@ (tables (MappingMethod)) (triples (string->identifier "mappingMethod" (field MappingMethod Name)) - (set rdf:type 'gn-id:mappingMethod))) + (set rdf:type 'gn:mappingMethod))) (define-dump dump-inbred-set (tables (InbredSet @@ -89,7 +89,7 @@ "" (field InbredSet Name) #:separator "" #:proc string-capitalize-first) - (set rdf:type 'gn-id:inbredSet) + (set rdf:type 'gn:inbredSet) (set gn-term:binomialName (field InbredSet FullName)) (set gn-term:geneticType (field InbredSet GeneticType)) (set gn-term:inbredFamily (field InbredSet Family)) @@ -97,7 +97,7 @@ (set gn-term:inbredSetCode (field InbredSet InbredSetCode)) (set gn-term:inbredSetOfSpecies (string->identifier "" (field Species FullName BinomialName) - #:ontology "gn-id:" + #:ontology "gn:" #:separator "" #:proc string-capitalize-first)) (set gn-term:genotype @@ -112,7 +112,7 @@ (schema-triples (gn-term:normalization rdfs:range rdfs:Literal)) (triples (string->identifier "avgmethod" (field AvgMethod Name)) - (set rdf:type 'gn-id:avgMethod) + (set rdf:type 'gn:avgMethod) (set gn-term:normalization (field AvgMethod Normalization)))) @@ -122,9 +122,9 @@ (connection %connection-settings) (table-metadata? #f) (prefixes - '(("gn-id:" "<http://genenetwork.org/terms/>") - ("gn-term:" "<http://genenetwork.org/terms/>") - ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>") + '(("gn:" "<http://genenetwork.org/id/>") + ("gn-term:" "<http://genenetwork.org/term/>") + ("rdf:" "<https://www.w3.org/1999/02/22-rdf-syntax-ns#>") ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>") ("taxon:" "<http://purl.uniprot.org/taxonomy/>"))) (inputs |