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| author | Munyoki Kilyungi | 2023-05-26 13:02:23 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-05-30 11:51:30 +0300 |
| commit | b0e6ce4d4cd6440a42ecbece895e44ed47979d27 (patch) | |
| tree | b1720145ab261891ee2c3d5b4ad20726729b18ab /examples/dump-probeset.scm | |
| parent | f5bcefab17ee0e4a5230c4a95b6b1afb5893c4df (diff) | |
| download | gn-transform-databases-b0e6ce4d4cd6440a42ecbece895e44ed47979d27.tar.gz | |
Make a probeset's tissue multiset
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/dump-probeset.scm')
| -rwxr-xr-x | examples/dump-probeset.scm | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/examples/dump-probeset.scm b/examples/dump-probeset.scm index ecd74e3..bdcdcca 100755 --- a/examples/dump-probeset.scm +++ b/examples/dump-probeset.scm @@ -35,6 +35,10 @@ (set gn:description (field ProbeSet description)) (set gn:chr (field ProbeSet Chr)) (set gn:mb (annotate-field (field ("IFNULL(ProbeSet.Mb, '')" Mb)) '^^xsd:double)) + (multiset gn:tissue (map string-trim-both + (string-split + (field ("IFNULL(ProbeSet.Tissue, '')" Tissue)) + #\,))) (multiset gn:alias (map string-trim-both (string-split (sanitize-rdf-string (field ProbeSet alias)) #\;))) |