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| author | Munyoki Kilyungi | 2023-05-29 18:11:50 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-05-30 11:51:30 +0300 |
| commit | 2260b56a4f8e896ea9912efe98a8b74f57660b16 (patch) | |
| tree | 39b300ead4e8c884731196f6f3eabacc9cdbaa24 /examples/dump-probeset.scm | |
| parent | dfa7af5f422ea90f88025754e7f013ab3c6f8306 (diff) | |
| download | gn-transform-databases-2260b56a4f8e896ea9912efe98a8b74f57660b16.tar.gz | |
Dump OMIM as a normal string without any annotation
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/dump-probeset.scm')
| -rwxr-xr-x | examples/dump-probeset.scm | 5 |
1 files changed, 1 insertions, 4 deletions
diff --git a/examples/dump-probeset.scm b/examples/dump-probeset.scm index c28f7dd..730e914 100755 --- a/examples/dump-probeset.scm +++ b/examples/dump-probeset.scm @@ -54,10 +54,7 @@ (set gn:blatSeq (sanitize-rdf-string (string-trim-both (field ProbeSet BlatSeq)))) (set gn:targetSeq (sanitize-rdf-string (field ProbeSet TargetSeq))) - (set gn:omim - (ontology - 'omim: - (field ("IF(ProbeSet.OMIM REGEXP '^-?[0-9]+$' > 0, ProbeSet.OMIM, '')" OMIM)))) + (set gn:omim (sanitize-rdf-string (string-trim-both (field ProbeSet OMIM)))) (set gn:RefSeq_TranscriptId (field ProbeSet RefSeq_TranscriptId)) (set gn:uniProtReference (ontology 'uniprot: (field ProbeSet UniProtID))))) |