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| author | Munyoki Kilyungi | 2023-08-15 18:26:34 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-08-15 19:32:48 +0300 |
| commit | e1f390b7fab33d33fa3d813a74ae8b7d935c929b (patch) | |
| tree | 8b5b072d1ba92ae8fb136562c58f4a7b43095e19 /examples/dump-dataset-metadata.scm | |
| parent | cfd8100788158f0c421a43b4c2d8281a3992b1e3 (diff) | |
| download | gn-transform-databases-e1f390b7fab33d33fa3d813a74ae8b7d935c929b.tar.gz | |
Introduce phenotype/genotype/probeset Dataset as a category
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/dump-dataset-metadata.scm')
| -rwxr-xr-x | examples/dump-dataset-metadata.scm | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm index 3d2e1f9..e099bac 100755 --- a/examples/dump-dataset-metadata.scm +++ b/examples/dump-dataset-metadata.scm @@ -73,8 +73,9 @@ "WHERE GN_AccesionId IS NOT NULL") (schema-triples (gnc:dataset rdf:type gdmt:Dataset) - (gnc:genotype rdfs:subClassOf gnc:dataset) - (gnc:phenotype rdfs:subClassOf gnc:dataset) + (gnc:genotypeDataset rdfs:subClassOf gnc:dataset) + (gnc:phenotypeDataset rdfs:subClassOf gnc:dataset) + (gnc:probesetDataset rdfs:subClassOf gnc:dataset) (gnt:belongsToInbredSet rdfs:domain gnc:dataset) (gnt:belongsToInbredSet a owl:ObjectProperty) (gnt:belongsToInbredSet skos:definition "The InbredSet this resource belongs to") @@ -124,7 +125,7 @@ #:separator "" #:proc string-capitalize-first) (set rdf:type (string->symbol - (field ("IF(GenoFreeze.Id IS NOT NULL, 'gnc:genotype', IF(PublishFreeze.Id IS NOT NULL, 'gnc:phenotype', 'gnc:dataset'))" + (field ("IF(GenoFreeze.Id IS NOT NULL, 'gnc:genotypeDataset', IF(PublishFreeze.Id IS NOT NULL, 'gnc:phenotypeDataset', IF(ProbeSetFreeze.Name IS NOT NULL, 'gnc:probesetDataset', 'gnc:dataset')))" rdfType)))) (set rdfs:label (regexp-substitute/global #f "^[Nn]one$" |