Move genechip ontology to own file.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>

1 files changed, 1 insertions, 29 deletions

diff --git a/examples/dataset-metadata.scm b/examples/dataset-metadata.scm
index 38dac9c..23dd48e 100755
--- a/examples/dataset-metadata.scm
+++ b/examples/dataset-metadata.scm
@@ -12,33 +12,6 @@
              (transform special-forms))
 
 
-
-(define-transformer gene-chip
-  (tables (GeneChip
-           (left-join Species "USING (SpeciesId)")))
-  (schema-triples
-   (gnc:gene_chip a skos:Concept)
-   (gnc:gene_chip
-    skos:description
-    "This is a set of controlled terms that are used to describe a given gene chip/platform")
-   (gnt:has_geo_series_id rdfs:domain gnc:platform)
-   (gnt:has_geo_series_id rdfs:domain gnc:gene_chip)
-   (gnt:has_go_tree_value a owl:ObjectProperty)
-   (gnt:has_go_tree_value skos:definition "This resource the following GO tree value")
-   (gnt:has_go_tree_value rdfs:domain gnc:gene_chip))
-  (triples (string->identifier "platform" (field GeneChip Name) #:separator "_")
-    (set rdf:type 'gnc:gene_chip)
-    (set rdfs:label (field GeneChip GeneChipName))
-    (set skos:prefLabel (field GeneChip Name))
-    (set skos:altLabel (field ("IF(GeneChip.GeneChipName != GeneChip.Title, Title, NULL)"
-                               Title)))
-    (set gnt:has_go_tree_value (field GeneChip Go_tree_value))
-    (set xkos:classifiedUnder
-         (string->identifier "" (remap-species-identifiers (field Species Fullname)) #:separator ""))
-    (set gnt:has_geo_series_id
-         (ontology 'geoSeries:
-                   (string-trim-both (field GeneChip GeoPlatform))))))
-
 (define-transformer info-files
   (tables (InfoFiles
            (left-join PublishFreeze "ON InfoFiles.InfoPageName = PublishFreeze.Name")
@@ -455,8 +428,7 @@
     (list info-files
           publishfreeze
           genofreeze
-          probesetfreeze
-          gene-chip))
+          probesetfreeze))
    (outputs
     `(#:documentation ,documentation
       #:rdf ,output))))