diff options
| author | Munyoki Kilyungi | 2026-01-26 15:15:44 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-01-26 15:15:57 +0300 |
| commit | 85cb2c133f7b6d25c817587bee502eb419498c07 (patch) | |
| tree | ed3c8bc720794a0d13d986f6e6964325cfbf0c4e /examples/classification.scm | |
| parent | e46380b11c444012fde18e69fd677aa5ccd65de2 (diff) | |
| download | gn-transform-databases-85cb2c133f7b6d25c817587bee502eb419498c07.tar.gz | |
Add species-families.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/classification.scm')
| -rwxr-xr-x | examples/classification.scm | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/examples/classification.scm b/examples/classification.scm index ecc071b..5c29238 100755 --- a/examples/classification.scm +++ b/examples/classification.scm @@ -119,6 +119,19 @@ (set gnt:has_strain (string->identifier "set" (field InbredSet Name InbredSetName) #:separator "_")))) +(define-transformer species-families + (tables (Species) + "GROUP BY FAMILY") + (schema-triples + (gnt:has_family_order_id a owl:DatatypeProperty)) + (triples (string->identifier "family" (field Species Family) #:separator "_") + (set gnt:has_species + (string->identifier "" (remap-species-identifiers (field Species Fullname)))) + (set rdfs:label (field Species Family)) + (set gnt:has_family_order_id + (annotate-field (field Species OrderId) + '^^xsd:integer)))) + (define-transformer inbred-set (tables (InbredSet (left-join Species "ON InbredSet.SpeciesId=Species.Id") @@ -200,6 +213,8 @@ species species-fan-out inbred-set)) + species-families + inbredset-families (outputs `(#:documentation ,documentation #:rdf ,output)))) |