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| author | Munyoki Kilyungi | 2024-09-12 11:20:33 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2024-09-12 11:20:33 +0300 |
| commit | f883b188b9a75a5f609b973fb5cc76db70304518 (patch) | |
| tree | 38492906dce05bf8ab88df695a223c7a89fd51ba | |
| parent | 41e195621ad8ce041bf4d048516a8c4fd4e8b392 (diff) | |
| download | gn-transform-databases-f883b188b9a75a5f609b973fb5cc76db70304518.tar.gz | |
Remove extra nodes for symbols.
In GN, symbols don't have metadata. As such, for the moment, just use the string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/generif.scm | 30 |
1 files changed, 0 insertions, 30 deletions
diff --git a/examples/generif.scm b/examples/generif.scm index 6619d9e..27fa388 100755 --- a/examples/generif.scm +++ b/examples/generif.scm @@ -16,34 +16,6 @@ -(define-transformer genewiki-symbols - (tables (GeneRIF_BASIC) - "GROUP BY BINARY symbol") - (triples - (string->identifier - "symbol" - (regexp-substitute/global #f "[^A-Za-z0-9:]" - (field GeneRIF_BASIC symbol) - 'pre "_" 'post) - #:proc (lambda (x) x)) - (set rdfs:label - (field GeneRIF_BASIC symbol)))) - -;; Some symbols exist in the RIF table that don't exist in the GeneRIF -;; table. -(define-transformer generif-symbols - (tables (GeneRIF) - "WHERE symbol NOT IN (SELECT symbol from GeneRIF_BASIC) GROUP BY BINARY symbol") - (triples - (string->identifier - "symbol" - (regexp-substitute/global #f "[^A-Za-z0-9:]" - (field GeneRIF symbol) - 'pre "_" 'post) - #:proc (lambda (x) x)) - (set rdfs:label - (field GeneRIF symbol)))) - (define-transformer gn-genewiki-entries (tables (GeneRIF (left-join Species "ON Species.SpeciesId = GeneRIF.SpeciesId") @@ -228,8 +200,6 @@ GROUP BY GeneRIF.Id, GeneRIF.versionId, GeneRIF.symbol") ("owl:" "<http://www.w3.org/2002/07/owl#>"))) (inputs (list - genewiki-symbols - generif-symbols gn-genewiki-entries ncbi-genewiki-entries)) (outputs |