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authorMunyoki Kilyungi2026-02-18 11:05:23 +0300
committerMunyoki Kilyungi2026-02-18 11:05:23 +0300
commitf5aaa90631276b66295fd82336b75a5bc3c2cc93 (patch)
tree55ec3153eecf36e21044d80be85ec777de869511
parent2091c1c812912755d9cd67723f1ba45a6666de5d (diff)
downloadgn-transform-databases-f5aaa90631276b66295fd82336b75a5bc3c2cc93.tar.gz
Add fan-out to probeset data points. HEAD master
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rwxr-xr-xexamples/probesets-experiment-metadata.scm9
1 files changed, 8 insertions, 1 deletions
diff --git a/examples/probesets-experiment-metadata.scm b/examples/probesets-experiment-metadata.scm
index b15f7e9..b87af10 100755
--- a/examples/probesets-experiment-metadata.scm
+++ b/examples/probesets-experiment-metadata.scm
@@ -23,6 +23,11 @@
             (uri-encode
              (format #f "~a_~a" (field ProbeSetFreeze Name ProbeSetFreezeName) (field ProbeSet Name ProbeSetName))) #:separator "_")
     (set rdf:type 'gnc:molecular_trait_metadata)
+    (set dcat:distribution
+         (string->symbol
+          (format #f "gnd:~a.json"
+                  (field ("CONCAT(ProbeSetFreeze.Name, '_', ProbeSet.Name)"
+                          PublishFreeze)))) )
     (set gnt:has_probeset (string->identifier "probeset" (field ProbeSet Name ProbeSetName)))
     (set dcat:isPartOf (string->identifier "dataset" (field ProbeSetFreeze Name ProbeSetFreezeName)
                                            #:separator "_"))
@@ -69,9 +74,11 @@
                    "count"))
       (rows-per-chunk 1000000)
       (prefixes
-       '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+       '(("dcat:" "<http://www.w3.org/ns/dcat#>")
+         ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
          ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
          ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
+         ("gnd:" "<https://cd.genenetwork.org/api3/lmdb/v1/data/traits/>")
          ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
          ("kegg:" "<http://bio2rdf.org/ns/kegg#>")
          ("pubchem:" "<https://pubchem.ncbi.nlm.nih.gov/>")