Add gn:traitId and gn:publicationId.

In GeneNetwork, a phenonytpe is currently identified by it's
ID (primary key of the table from MariaDB). The only way to relate it
to a publication is through a publication ID. This is important
because there are some publications with a NULL value for "pubmed ID"
and as such without the publication ID, some data is lost as there's
no way to point to publication with a NULL "pubmed ID."

* dump.scm (dump-publish-xref): Define gn:traitId and
gn:publicationId.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

1 files changed, 5 insertions, 1 deletions

diff --git a/dump.scm b/dump.scm
index 2a893ae..439f9e2 100755
--- a/dump.scm
+++ b/dump.scm
@@ -489,7 +489,11 @@ must be remedied."
    (gn:phenotypeOfSpecies rdfs:domain gn:phenotype)
    (gn:phenotypeOfSpecies rdfs:range gn:species))
   (triples (phenotype-id->id (field PublishXRef PhenotypeId))
-    (set gn:phenotypeOfSpecies (inbred-set-name->id (field InbredSet Name)))))
+    (set gn:phenotypeOfSpecies (inbred-set-name->id (field InbredSet Name)))
+    (set gn:traitId (field PublishXRef id))
+    (set gn:publicationId
+         (string->identifier "publication"
+                             (number->string (field PublishXRef PublicationId))))))
 
 (define tissue-short-name->id
   (cut string->identifier "tissue" <>))