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author | Arun Isaac | 2021-12-24 15:10:35 +0530 |
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committer | Arun Isaac | 2021-12-24 15:10:35 +0530 |
commit | 882b9fd2e23598d4dc8b089721839a10d6f45add (patch) | |
tree | 3e53543b08c13217db80a4bec148856860ef9218 | |
parent | 31a43fc346f82e24f0740a162c3372454297fa54 (diff) | |
download | gn-transform-databases-882b9fd2e23598d4dc8b089721839a10d6f45add.tar.gz |
Visualize RDF schema.
* visualize-schema.scm (literal-node-id, rdf-type-nodes,
rdf-literal-nodes, rdf-edges, write-rdf-visualization): New functions.
(main): Call write-rdf-visualization.
-rw-r--r-- | visualize-schema.scm | 92 |
1 files changed, 91 insertions, 1 deletions
diff --git a/visualize-schema.scm b/visualize-schema.scm index be1b9e4..deb1032 100644 --- a/visualize-schema.scm +++ b/visualize-schema.scm @@ -181,8 +181,98 @@ PORT." #:edges (foreign-key-graphviz-edges all-tables)) port))) +(define (literal-node-id domain predicate) + "Return the graphviz node identifier for an RDF literal node which +is the range of PREDICATE. The domain of PREDICATE is DOMAIN." + (string-append "literal_node__" + (basename domain) + "_" + (basename predicate))) + +(define (rdf-type-nodes) + "Return the list of all graphviz nodes representing types." + (map (match-lambda + ((type) + (graph-node (basename type) + `((fillcolor . lightgreen) + (style . filled))))) + (sparql-query-records + "SELECT DISTINCT ?type +WHERE { + { ?predicate rdfs:domain ?type } + UNION + { ?predicate rdfs:range ?type } + MINUS + { ?predicate rdfs:range rdfs:Literal } +}"))) + +(define (rdf-literal-nodes) + "Return the list of all graphviz nodes representing literal +properties." + (map (match-lambda + ((type predicate tables fields) + (graph-node + (literal-node-id type predicate) + `((shape . box) + (style . filled) + (fillcolor . gold) + (label . ,(basename predicate)) + (tooltip . ,(string-join + (map (lambda (table field) + (string-append table "." field)) + (string-split tables #\,) + (string-split fields #\,)) + ", ")))))) + (sparql-query-records + "PREFIX gn: <http://genenetwork.org/> +SELECT ?type ?predicate GROUP_CONCAT(?tablename ; separator=\",\") GROUP_CONCAT(?fieldname ; separator=\",\") +WHERE +{ + ?predicate rdfs:domain ?type ; + rdfs:range rdfs:Literal . + ?dump rdf:type gn:dump ; + gn:createsPredicate ?predicate ; + gn:forSubjectType ?type ; + gn:dependsOn ?field . + ?field rdf:type gn:sqlTableField ; + gn:name ?fieldname . + ?table rdf:type gn:sqlTable ; + gn:hasField ?field ; + gn:name ?tablename . +} GROUP BY ?type ?predicate +"))) + +(define (rdf-edges) + "Return the list of all graphviz edges in the RDF visualization." + (map (match-lambda + ((type predicate range) + (if (string=? range (string-trim-both (rdfs "Literal") + (char-set #\< #\>))) + ;; Literal properties + (graph-edge (basename type) + (literal-node-id type predicate)) + ;; Relations between classes + (graph-edge (basename type) + (basename range))))) + (sparql-query-records + (select '(type predicate range) + `((predicate ,(rdfs "domain") type) + (predicate ,(rdfs "range") range)))))) + +(define (write-rdf-visualization port) + "Write a visualization of the RDF schema in graphviz dot syntax to +PORT." + (graph->dot + (graph 'rdf + #:nodes (append (rdf-type-nodes) + (rdf-literal-nodes)) + #:edges (rdf-edges)) + port)) + (define (main) (call-with-output-file "sql.dot" - write-sql-visualization)) + write-sql-visualization) + (call-with-output-file "rdf.dot" + write-rdf-visualization)) (main) |