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| author | Munyoki Kilyungi | 2026-03-06 10:10:34 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-03-06 10:11:06 +0300 |
| commit | 02d5b8b4e478fd7f4eb9d53754fb846b5165b9d0 (patch) | |
| tree | a8500c989639ad5c29333f2183faa5c3b41ddf96 | |
| parent | a5c1958d5b1abfaaa4ae2a2749ce7f8b0ed3055c (diff) | |
| download | gn-transform-databases-02d5b8b4e478fd7f4eb9d53754fb846b5165b9d0.tar.gz | |
Comment out node that points to lmdb data for probesets.
Right now, we have:
"dcat:distribution gnd:GTEx_Lung _0414_ENSG00000262400.1.json ;"
Note the space after the "Lung". Comment this out for now, so that we
agree with Alex how that should look like.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/probesets-experiment-metadata.scm | 21 |
1 files changed, 11 insertions, 10 deletions
diff --git a/examples/probesets-experiment-metadata.scm b/examples/probesets-experiment-metadata.scm index b2eb93e..83a8ead 100755 --- a/examples/probesets-experiment-metadata.scm +++ b/examples/probesets-experiment-metadata.scm @@ -23,12 +23,13 @@ (uri-encode (format #f "~a_~a" (field ProbeSetFreeze Name ProbeSetFreezeName) (field ProbeSet Name ProbeSetName))) #:separator "_") (set rdf:type 'gnc:molecular_trait_metadata) - (set dcat:distribution - (string->symbol - (sanitize-rdf-string - (format #f "gnd:~a.json" - (field ("CONCAT(ProbeSetFreeze.Name, '_', ProbeSet.Name)" - PublishFreeze))))) ) + ;; KLUDGE: Agree with Alex on how we want to name this. + ;; (set dcat:distribution + ;; (string->symbol + ;; (sanitize-rdf-string + ;; (format #f "gnd:~a.json" + ;; (field ("CONCAT(ProbeSetFreeze.Name, '_', ProbeSet.Name)" + ;; PublishFreeze))))) ) (set gnt:has_probeset (string->identifier "probeset" (field ProbeSet Name ProbeSetName))) (set dcat:isPartOf (string->identifier "dataset" (field ProbeSetFreeze Name ProbeSetFreezeName) #:separator "_")) @@ -41,11 +42,11 @@ (field ("IFNULL((ProbeSetXRef.LRS/4.604), '')" lrs)) '^^xsd:double)) (set gnt:pvalue (annotate-field - (field ("IFNULL((ProbeSetXRef.pValue), '')" pValue)) - '^^xsd:double)) + (field ("IFNULL((ProbeSetXRef.pValue), '')" pValue)) + '^^xsd:double)) (set gnt:additive (annotate-field - (field ("IFNULL((ProbeSetXRef.additive), '')" additive)) - '^^xsd:double)) + (field ("IFNULL((ProbeSetXRef.additive), '')" additive)) + '^^xsd:double)) (set gnt:h2 (annotate-field (field ("IFNULL((ProbeSetXRef.h2), '')" h2)) '^^xsd:double)))) |