initial commit

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+(use-modules (shepherd service))
+
+(define date+%s
+  (strftime "%s" (gmtime (current-time))))
+
+(define bnw
+  (make <service>
+	#:provides '(bnw)
+	#:docstring "Run the Beyesian Network Webserver"
+	#:start (make-forkexec-constructor
+		  '("/usr/bin/sudo" "/home/shepherd/run_bnw.sh")
+		  #:log-file (string-append "/home/shepherd/logs/bnw-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services bnw)
+
+(define gitea
+  (make <service>
+	#:provides '(gitea)
+	#:docstring "Run a Gitea instance"
+	#:start (make-forkexec-constructor
+		  '("/usr/bin/sudo" "/home/shepherd/run_gitea.sh")
+		  #:log-file (string-append "/home/shepherd/logs/gitea-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services gitea)
+
+(define ipfs
+  (make <service>
+	#:provides '(ipfs)
+	#:docstring "Run the IPFS daemon"
+	#:start (make-forkexec-constructor
+		  '("/usr/bin/sudo" "/home/shepherd/run_ipfs.sh")
+		  #:log-file (string-append "/home/shepherd/logs/ipfs-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services ipfs)
+
+(define mcron
+  (make <service>
+	#:provides '(mcron)
+	#:docstring "Run the mcron daemon"
+	#:start (make-forkexec-constructor
+		  '("/var/guix/profiles/per-user/shepherd/guix-profile/bin/mcron")
+		  #:log-file (string-append "/home/shepherd/logs/mcron-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services mcron)
+
+(define power
+  (make <service>
+	#:provides '(power)
+	#:docstring "Run the BXD Power Calculator app"
+	#:start (make-forkexec-constructor
+		  ;'(system* "/var/guix/profiles/per-user/shepherd/current-guix/bin/guix" "environment" "--ad-hoc" "rn6-assembly-error-app" "--" "/bin/sh -c 'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ rn6-assembly-error-app'")
+		  '("/home/shepherd/run_power.sh")
+		  #:log-file (string-append "/home/shepherd/logs/power-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services power)
+
+(define rn6app
+  (make <service>
+	#:provides '(rn6app)
+	#:docstring "Run RN6 Assembly Error app"
+	#:start (make-forkexec-constructor
+		  ;'(system* "/var/guix/profiles/per-user/shepherd/current-guix/bin/guix" "environment" "--ad-hoc" "rn6-assembly-error-app" "--" "/bin/sh -c 'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ rn6-assembly-error-app'")
+		  '("/home/shepherd/run_rn6app.sh")
+		  #:log-file (string-append "/home/shepherd/logs/rn6app-"
+					    date+%s ".log"))
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services rn6app)
+
+(define test-upgrade
+  (make <service>
+	#:provides '(test-upgrade)
+	#:docstring "Build all the services to make sure they work on an upgrade"
+	#:start (make-forkexec-constructor
+		  (when (zero? (system* "guix" "build" "-L" "/home/shepherd/guix-bioinformatics"
+					"--no-grafts" "bnw" "gitea" "go-ipfs" "edirect-gn"
+					"bxd-power-calculator-app" "rn6-assembly-error-app"))
+		    (zero? (system* "guix" "system" "-L" "/home/shepherd/guix-bioinformatics"
+				    "container" "/home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm"
+				    "--share=/home/shepherd/logs/bnw-server=/var/log" "--network")))
+		  #:log-file (string-append "/home/shepherd/logs/test-upgrade-"
+					    date+%s ".log"))
+	#:one-shot? #t))
+(register-services test-upgrade)
+
+;; Send shepherd into the background
+(action 'shepherd 'daemonize)
+
+;; Services to start when shepherd starts:
+;; Add the name of each service that should be started to the list
+;; below passed to 'for-each'.
+(for-each start '(bnw gitea ipfs mcron power rn6app))