diff options
| author | Shepherd on Tux02 | 2024-11-22 04:59:09 -0600 |
|---|---|---|
| committer | Shepherd on Tux02 | 2024-11-22 04:59:09 -0600 |
| commit | d69ec58fe250f73aa3115084241270fc1ab65d67 (patch) | |
| tree | 2f02438b1c1dc81fd94b85bb4b61385584ceba8a /run_genecup.sh | |
| parent | 82f0b367714afd8d9c9894d762c64f636d047b06 (diff) | |
| download | gn-shepherd-services-d69ec58fe250f73aa3115084241270fc1ab65d67.tar.gz | |
Modernize guix invocation with shell and --root
Diffstat (limited to 'run_genecup.sh')
| -rwxr-xr-x | run_genecup.sh | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/run_genecup.sh b/run_genecup.sh index 8d57704..7e29813 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -10,5 +10,5 @@ export NLTK_DATA=/export2/PubMed/nltk_data cd /home/shepherd/services/genecup cd $(/home/shepherd/services/genecup/guix/bin/guix build -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 4) -/home/shepherd/services/genecup/guix/bin/guix shell -C -N --expose=/etc/ssl/certs --expose=$EDIRECT_PUBMED_MASTER --share=$TMPDIR -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native coreutils-minimal -- env TMPDIR=$TMPDIR EDIRECT_PUBMED_MASTER=$EDIRECT_PUBMED_MASTER NLTK_DATA=$NLTK_DATA ./server.py +/home/shepherd/services/genecup/guix/bin/guix shell --root=/home/shepherd/guix-profiles/genecup-app -C -N --expose=/etc/ssl/certs --expose=$EDIRECT_PUBMED_MASTER --share=$TMPDIR -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native coreutils-minimal -- env TMPDIR=$TMPDIR EDIRECT_PUBMED_MASTER=$EDIRECT_PUBMED_MASTER NLTK_DATA=$NLTK_DATA ./server.py |