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| author | Efraim Flashner | 2021-05-04 12:35:02 +0000 |
|---|---|---|
| committer | Shepherd | 2021-05-06 09:21:38 +0000 |
| commit | ec2ddc77f9e97794d0bc04cc37279c040c6aaf08 (patch) | |
| tree | 1e55233d05f4d48c9313b6d761751ac1845a8085 | |
| parent | 2474df352b0de12dc18ba46f00c5ceddd0f29863 (diff) | |
| download | gn-shepherd-services-ec2ddc77f9e97794d0bc04cc37279c040c6aaf08.tar.gz | |
genome-browser: new service.
| -rwxr-xr-x | run_genome_browser.sh | 2 | ||||
| -rw-r--r-- | shepherd/init.d/genome-browser.scm | 12 |
2 files changed, 14 insertions, 0 deletions
diff --git a/run_genome_browser.sh b/run_genome_browser.sh new file mode 100755 index 0000000..68c57fb --- /dev/null +++ b/run_genome_browser.sh @@ -0,0 +1,2 @@ +#!/bin/sh +$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash) diff --git a/shepherd/init.d/genome-browser.scm b/shepherd/init.d/genome-browser.scm new file mode 100644 index 0000000..60d5ce7 --- /dev/null +++ b/shepherd/init.d/genome-browser.scm @@ -0,0 +1,12 @@ +(define genome-browser + (make <service> + #:provides '(genome-browser) + #:docstring "Run an instance of the UCSC Genome Browser webserver" + #:start (make-forkexec-constructor + '("/usr/bin/sudo" "/home/shepherd/run_genome_browser.sh") + #:log-file "/home/shepherd/logs/genome-browser.log") + #:stop (make-kill-destructor) + #:respawn? #t)) +(register-services genome-browser) + +(start genome-browser) |