BNW: run bnw as a system container - needs root privilege

1 files changed, 12 insertions, 1 deletions

diff --git a/run_bnw.sh b/run_bnw.sh
index afe9435..6ff99ba 100755
--- a/run_bnw.sh
+++ b/run_bnw.sh
@@ -1,5 +1,16 @@
 #!/bin/sh
 # This version for the bnw guix profile which includes guix-bioinformatics, using bnw-channels.scm.
-$(/home/shepherd/guix-profiles/bnw/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm --share=/home/shepherd/logs/bnw-server=/var/log --network)
+#
+# Note the deployment shifted, see https://issues.genenetwork.org/issues/systems/apps
+
+# $(/home/shepherd/guix-profiles/bnw/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm --share=/home/shepherd/logs/bnw-server=/var/log --network)
+
+# Here we simply build the system container and link it:
+
+rm -vf /usr/local/bin/bnw-app-container
+
+/home/shepherd/guix-profiles/bnw/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm --share=/home/shepherd/logs/bnw-server=/var/log --network --root=/usr/local/bin/bnw-app-container
+
+/usr/local/bin/bnw-app-container
 
 #$(/home/shepherd/guix-profiles/bnw/bin/guix system container -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics /home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm --share=/home/shepherd/logs/bnw-server=/var/log --network)