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authorEfraim Flashner2020-06-28 10:58:09 +0000
committerShepherd2020-06-28 10:58:39 +0000
commit3ca5af0178efc4bce38251de955cac97a64ba2ca (patch)
tree504c5cf8ac644f65c4fab9976c0e09480116eb0d
parentae6fa1540e90d27cf4fa8060a70377f534aede53 (diff)
downloadgn-shepherd-services-3ca5af0178efc4bce38251de955cac97a64ba2ca.tar.gz
covid19-pubseq: New service.
-rwxr-xr-xrun_covid19-pubseq.sh2
-rw-r--r--shepherd/init.d/covid19-pubseq.scm12
-rw-r--r--shepherd/init.d/test-upgrade.scm2
3 files changed, 15 insertions, 1 deletions
diff --git a/run_covid19-pubseq.sh b/run_covid19-pubseq.sh
new file mode 100755
index 0000000..a0658b7
--- /dev/null
+++ b/run_covid19-pubseq.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+$(/home/shepherd/.config/guix/current/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/bh20-seq-resource-container.scm --share=/export/tmp=/export/tmp --network)
diff --git a/shepherd/init.d/covid19-pubseq.scm b/shepherd/init.d/covid19-pubseq.scm
new file mode 100644
index 0000000..0d1709d
--- /dev/null
+++ b/shepherd/init.d/covid19-pubseq.scm
@@ -0,0 +1,12 @@
+(define covid19-pubseq
+ (make <service>
+ #:provides '(covid19-pubseq)
+ #:docstring "Run the COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource Webserver"
+ #:start (make-forkexec-constructor
+ '("/usr/bin/sudo" "/home/shepherd/run_covid19-pubseq.sh")
+ #:log-file "/home/shepherd/logs/covid19-pubseq.log")
+ #:stop (make-kill-destructor)
+ #:respawn? #t))
+(register-services covid19-pubseq)
+
+(start covid19-pubseq)
diff --git a/shepherd/init.d/test-upgrade.scm b/shepherd/init.d/test-upgrade.scm
index 4d9687a..7d913e6 100644
--- a/shepherd/init.d/test-upgrade.scm
+++ b/shepherd/init.d/test-upgrade.scm
@@ -8,7 +8,7 @@
'("guix" "build" "-L" "/home/shepherd/guix-bioinformatics"
"--no-grafts" "bnw" "gitea" "go-ipfs" "edirect"
"bxd-power-calculator-app" "rn6-assembly-error-app"
- "singlecellrshiny" "virtuoso-ose" "hrdp-project")
+ "singlecellrshiny" "virtuoso-ose" "hrdp-project" "bh20-seq-resource")
;(zero? (system* "guix" "system" "-L" "/home/shepherd/guix-bioinformatics"
; "container" "/home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm"
; "--share=/home/shepherd/logs/bnw-server=/var/log" "--network")))