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authorShepherd on Tux022024-06-20 10:52:12 -0500
committerShepherd on Tux022024-06-20 10:52:12 -0500
commit168f7d9b645f132cf4d9ce885e4c466be7d328e1 (patch)
tree7b560c48cfdb38fba37c939ec584e2d9c10e4f91
parent7983318936c65f2af0c079414a0be9d7f7af0fcc (diff)
downloadgn-shepherd-services-168f7d9b645f132cf4d9ce885e4c466be7d328e1.tar.gz
genecup runner
-rwxr-xr-xrun_genecup.sh11
1 files changed, 6 insertions, 5 deletions
diff --git a/run_genecup.sh b/run_genecup.sh
index f9d4de1..ea43a0d 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -6,9 +6,10 @@ export TMPDIR=/export/ratspub/tmp
export NLTK_DATA=/export2/PubMed/nltk_data
# This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm.
-/home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4
-cd $(/home/shepherd/guix-profiles/genecup/bin/guix build genecup-with-tensorflow-native)
-/home/shepherd/guix-profiles/genecup/bin/guix environment --ad-hoc genecup-with-tensorflow-native -- ./server.py
+# shepherd@tux02:~/services/genecup$ ./guix/bin/guix build -L ~/services/genecup/guix-past/modules -L ~/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 24 -M 8
+
+cd /home/shepherd/services/genecup
+cd $(/home/shepherd/services/genecup/guix/bin/guix build -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 4)
+
+/home/shepherd/services/genecup/guix/bin/guix shell -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -- ./server.py
-#cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native)
-#/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py