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#! /bin/bash -e
# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net>
# Copyright © 2022, 2024 Frederick M. Muriithi <fredmanglis@gmail.com>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines. If not, see
# <https://www.gnu.org/licenses/>.
# Build and install genenetwork production container on tux02.
SCRIPTARGS=("$@")
MODULEARGS=()
if [ "${#SCRIPTARGS[@]}" -gt 0 ]
then
echo "===== Auxilliary module load paths ====="
for path in "${SCRIPTARGS[@]}"
do
echo "-L ${path}"
MODULEARGS+=("-L" "${path}")
done
echo "===== END: Auxilliary module load paths ====="
fi
container_script=$(guix system container \
"${MODULEARGS[@]}" \
--network \
--load-path=. \
--verbosity=3 \
--share=/export2/guix-containers/genenetwork/uploader/var/genenetwork=/var/genenetwork \
--share=/export2/guix-containers/genenetwork/uploader/var/lib/acme=/var/lib/acme \
--share=/export2/guix-containers/genenetwork/uploader/var/lib/mysql=/var/lib/mysql \
--share=/export2/guix-containers/genenetwork/uploader/var/lib/virtuoso=/var/lib/virtuoso \
--share=/export2/guix-containers/genenetwork/uploader/var/log=/var/log \
--share=/export2/guix-containers/genenetwork/uploader/etc/genenetwork=/etc/genenetwork \
--share=/export/data/uploader/genenetwork-xapian=/export/data/genenetwork-xapian \
--share=/export/data/uploader/genenetwork-sqlite=/export/data/genenetwork-sqlite \
--expose=/export/data/uploader/genotype_files=/export/data/genenetwork/genotype_files \
--expose=/export/data/uploader/genenetwork3 \
--share=/export/data/uploader/gn-uploader \
--share=/var/run/mysqld3307=/run/mysqld \
uploader.scm)
echo "${container_script}"
sudo ln --force --symbolic "${container_script}" /usr/local/bin/genenetwork-uploader-container
sudo ln --force --symbolic /usr/local/bin/genenetwork-uploader-container /var/guix/gcroots
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