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;;; genenetwork-machines --- Guix configuration for genenetwork machines
;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2024 Frederick Muriuki Muriithi <fredmanglis@protonmail.com>
;;;
;;; This file is part of genenetwork-machines.
;;;
;;; genenetwork-machines is free software: you can redistribute it
;;; and/or modify it under the terms of the GNU General Public License
;;; as published by the Free Software Foundation, either version 3 of
;;; the License, or (at your option) any later version.
;;;
;;; genenetwork-machines is distributed in the hope that it will be
;;; useful, but WITHOUT ANY WARRANTY; without even the implied
;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
;;; See the GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with genenetwork-machines. If not, see
;;; <https://www.gnu.org/licenses/>.
;;; This is the production genenetwork container currently deployed on
;;; tux04.
(use-modules (gnu)
(genenetwork services genenetwork)
((gnu packages admin) #:select (shepherd))
(gn services databases)
(gnu services databases)
(forge acme)
(forge nginx)
(forge socket))
(operating-system
(host-name "genenetwork-production")
(timezone "UTC")
(locale "en_US.utf8")
(bootloader (bootloader-configuration
(bootloader grub-bootloader)
(targets (list "/dev/sdX"))))
(file-systems %base-file-systems)
(users %base-user-accounts)
(sudoers-file
(mixed-text-file "sudoers"
"@include " %sudoers-specification
"\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n"))
(packages %base-packages)
(services (cons* (service mysql-service-type
(mysql-configuration
(auto-upgrade? #f)))
(service virtuoso-service-type
(virtuoso-configuration
(server-port 9892)
(http-server-port 9893)
(dirs-allowed "/var/lib/virtuoso")
(number-of-buffers 4000000)
(maximum-dirty-buffers 3000000)
(database-file "/var/lib/virtuoso/genenetwork-virtuoso.db")
(transaction-file "/var/lib/virtuoso/genenetwork-virtuoso.trx")))
(service forge-nginx-service-type
(forge-nginx-configuration
(http-listen (forge-ip-socket
(ip "0.0.0.0")
(port 9890)))
(https-listen (forge-ip-socket
(ip "0.0.0.0")
(port 9891)))))
(service acme-service-type
(acme-configuration
(email "arunisaac@systemreboot.net")))
(service redis-service-type
(redis-configuration
(bind "127.0.0.1")
(port 6379)
(working-directory "/var/lib/redis")))
(service genenetwork-service-type
(genenetwork-configuration
(server-name "genenetwork.org")
(gn-auth-server-name "auth.genenetwork.org")
(gn2-port 9894)
(gn3-port 9895)
(gn-auth-port 9896)
(sql-uri
"mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock")
(xapian-db "/var/lib/xapian")
(sparql-endpoint "http://localhost:9893/sparql")
(gn3-data-directory "/var/genenetwork/data/genenetwork3")
(gn2-secrets "/etc/genenetwork/genenetwork2")
(gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py")
(gn-auth-secrets "/etc/genenetwork/gn-auth")
(auth-db "/var/lib/genenetwork-sqlite/auth.db")
(llm-db-path "/var/lib/genenetwork-gnqa/llm.db")
(gn3-alias-server-port 9800)
(log-level 'debug)))
%base-services)))
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