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#! /bin/sh -e
# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines. If not, see
# <https://www.gnu.org/licenses/>.
# Build and install genenetwork development container on penguin2.
container_script=$(guix system container --network \
--verbosity=3 \
--load-path=. \
--share=/var/guix/daemon-socket=/var/host-guix/daemon-socket \
--share=/var/guix-containers/genenetwork-development/var/lib/laminar=/var/lib/laminar \
--share=/var/guix-containers/genenetwork-development/var/lib/tissue=/var/lib/tissue \
--share=/var/guix-containers/genenetwork-development/var/lib/virtuoso=/var/lib/virtuoso \
--expose=/export/data/genenetwork/genotype_files \
--share=/export/genenetwork-database-dump \
--share=/var/run/mysqld/mysqld.sock=/run/mysqld/mysqld.sock \
--share=/var/guix-containers/genenetwork-development/srv/http=/srv/http \
genenetwork-development.scm)
echo $container_script
sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-development-container
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