| Age | Commit message (Expand) | Author |
|---|
| 4 days | Don't share MariaDB data directory with the production container. | Frederick Muriuki Muriithi |
| 12 days | Bind the chosen host directory to genenetwork's TMPDIR path....Bind the original host path that was previously bound to the
container's /tmp directory to instead be bound to genenetwork's TMPDIR
directory.
| Frederick Muriuki Muriithi |
| 2025-02-03 | Bind virtuoso's TTL directory (readonly) to genenetwork container. | Frederick Muriuki Muriithi |
| 2025-01-06 | Add gn-guile shepherd service genenetwork-service-type....* genenetwork/services/genenetwork.scm: Import gn-guile, linux-container,
git-minimal, shepherd, least-authority, forge utils.
(<genenetwork-configuration>)[gn-guile-port, gn-doc-git-checkout]: New fields.
(gn-guile-gexp): New g-exp for running gn-guile.
(gn-guile-shepherd-service): New shepherd service to run gn-guile.
(genenetwork-service-type): Add gn-guile-shepherd-service.
* production-deploy.sh (container_script): Export gn-docs directory.
| Munyoki Kilyungi |
| 2024-11-05 | Bind host directory to the container's /tmp directory...Since the /tmp directory is used for a lot of things in the code, we
bind a host directory to it, so as to allow easier cleanup, and also
ensure the container does not run out of disk space.
| Frederick Muriuki Muriithi |
| 2024-10-29 | Specify path to LLM database in production....*
production.scm (operating-system)[services]{genenetwork-service-type}:
Add llm-db-path.
* production-deploy.sh: Share
/export2/guix-containers/genenetwork/var/lib/genenetwork-gnqa with
container.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Frederick Muriuki Muriithi |
| 2024-10-24 | Move production to tux04....* production-deploy.sh: Update paths for mysql, xapian and
genenetwork-sqlite directories. Share path to redis state directory.
* production.scm (operating-system)[services]{virtuoso-service-type}:
Update server-port and http-server-port.
{forge-nginx-service-type}: Update http and https ports.
{redis-service-type}: New service.
{genenetwork-service-type}: Update server-name, gn-auth-server-name,
gn2-port, gn3-port, gn-auth-port, xapian-db, sparql-endpoint and
gn3-data-directory. Add auth-db, log-level and gn3-alias-server-port.
Remove genotype-files.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Frederick Muriuki Muriithi |
| 2024-07-12 | Make the container's /var/log directory available on host...Make the container's logs available of the host to help with
troubleshooting and some stickiness for the logs.
| Frederick Muriuki Muriithi |
| 2024-03-02 | Restore default auth database path on production....*
production.scm (operating-system)[services]{genenetwork-service-type}:
Remove auth-db field.
* production-deploy.sh (container_script): Mount /var/genenetwork.
| Arun Isaac |
| 2024-03-01 | Set ownership of secrets files....* genenetwork/services/genenetwork.scm (genenetwork-activation): Set
ownership of secrets files.
* production-deploy.sh: Mount secrets files read-write.
| Arun Isaac |
| 2024-01-09 | Add "=" before --load-path argument value....guix requires "=" between argument names and values.
* production-deploy.sh: Add "=" before --load-path argument value.
| Arun Isaac |
| 2024-01-03 | Add GeneNetwork service to production container....* production.scm: Import (genenetwork services genenetwork), (forge
acme), (forge nginx) and (forge socket). Import shepherd from (gnu
packages admin).
(operating-system)[sudoers-file]: Allow acme user to restart nginx.
(services): Add forge-nginx, acme and genenetwork services.
| Arun Isaac |
| 2023-01-02 | Register containers as garbage collector roots....We don't want the Guix garbage collector accidentally clearing away
store items required by the container. So, register them as garbage
collector roots.
* genenetwork-development-deploy.sh, production-deploy.sh,
public-sparql-deploy.sh, virtuoso-deploy.sh: Register containers as
garbage collector roots.
| Arun Isaac |
| 2022-12-10 | Move guix container state to /export2....We prefer /export2 to house really large data.
* genenetwork-development-deploy.sh, production-deploy.sh,
public-sparql-deploy.sh, virtuoso-deploy.sh: Move guix container state
to /export2.
| Arun Isaac |
| 2022-08-29 | Run mysql server in production....* production.scm: Import (gnu services databases).
(operating-system)[services]: Add mysql-service-type.
* production-deploy.sh: Share mysql directory with container.
| Arun Isaac |
| 2022-08-29 | Run production in separate network namespace....The production container need interact with the outside world only
through a single Unix socket file on which the GeneNetwork web server
listens. Hide all other interfaces to it.
* production-deploy.sh (container_script): Remove --network flag.
| Arun Isaac |
| 2022-08-25 | Add production container....* production-deploy.sh, production.scm: New files.
| Arun Isaac |
