| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-05-12 | Fix shell var syntax in init_xapian for dir movegn-local-development-container | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-12 | Remove un-necessary copy. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-12 | Remove setting python path. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-12 | Fix command. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-12 | Remove hanging "continue". | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-12 | Update auth db. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Use correct secret key. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Add extra log info when generating and loading ttl files. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Delete ttl files if they exist. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Correctly set the sql-uri. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Remove unnecessary copy. | Munyoki Kilyungi | |
| 2025-05-10 | Skip if file already exists. | Munyoki Kilyungi | |
| 2025-05-10 | Improve copy. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Add fallback for container. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-10 | Proper indentation. | Munyoki Kilyungi | |
| 2025-05-09 | Add cli tutorial for genenetwork set-up. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-09 | Check for guix. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-09 | Add gn-uploader to development container. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-09 | Add gn-uploader-secrets.py | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-09 | Add empty gn-uploader sqlite db. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-09 | Modify auth.db to add gn-uploader as a client. | Munyoki Kilyungi | |
| 2025-05-08 | Remove nss-certs from container. | Munyoki Kilyungi | |
| This is already included in %base-packages. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-08 | Mount /var/lib/data. | Munyoki Kilyungi | |
| This is where all the virtuoso files are loaded. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-08 | Uso correct passwoord for virtuoso. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-08 | Change the dirs-allowed. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-08 | Add "--init-xapian". | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-08 | Add "--init-rdf" option. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-07 | Add local container connection settings for virtuoso. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-07 | Use "db_webqtl_local" for the database. | Munyoki Kilyungi | |
| 2025-05-07 | Verify that the profile has the guix-bioinformatic channel. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Add "--init-sql". | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Verify that the profile has the guix-bioinformatic channel. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Use "db_webqtl_local" for the database. | Munyoki Kilyungi | |
| Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Make sure that user has the latest guix-channel set up. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Add "--init-container" option. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Remove un-used gn-auth configuration variables. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-06 | Explicitly write to gn{2,3,-auth}.conf files. | Munyoki Kilyungi | |
| Make this files editable for local development, instead of interning them at the store. | |||
| 2025-05-01 | Revert "Add FAHAMU_AUTH_TOKEN." | Munyoki Kilyungi | |
| This reverts commit 482f9ec1294ce8649eb2b5e533b18099d51314cb. | |||
| 2025-05-01 | Add FAHAMU_AUTH_TOKEN. | Munyoki Kilyungi | |
| 2025-05-01 | Show the credentials for local development work. | Munyoki Kilyungi | |
| 2025-05-01 | Add nss-certs to the container. | Munyoki Kilyungi | |
| 2025-05-01 | Use a proper list. | Munyoki Kilyungi | |
| 2025-05-01 | Make the flask_session directory readable and writable by gn. | Munyoki Kilyungi | |
| 2025-05-01 | Create the json folder under genotypes. | Munyoki Kilyungi | |
| 2025-05-01 | Use the correct genotype file. | Munyoki Kilyungi | |
| 2025-05-01 | Add missing llm db file. | Munyoki Kilyungi | |
| 2025-05-01 | Create FLASK_SESSION directory if it doesn't exist. | Munyoki Kilyungi | |
| 2025-05-01 | Add FAHAMU_AUTH_TOKEN. | Munyoki Kilyungi | |
| User should modify this manually. | |||
| 2025-05-01 | Copy gn-auth secrets to the correct path. | Munyoki Kilyungi | |
| 2025-05-01 | Add default boiler plate for setting up conf files relevant for gn2. | Munyoki Kilyungi | |
 |
index : gn-machines | |
| Guix configuration for genenetwork machines |
| aboutsummaryrefslogtreecommitdiff |