Add gn-uploader service.

* genenetwork/services/genenetwork.scm (<gn-uploader-configuration>):
New type.
(gn-uploader-activation, gn-uploader-gunicorn-app,
gn-uploader-nginx-server-block): New functions.
(gn-uploader-service-type): New variable.
* uploader.scm, uploader-deploy.sh: New files.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

1 files changed, 76 insertions, 0 deletions

diff --git a/uploader.scm b/uploader.scm
new file mode 100644
index 0000000..9491a22
--- /dev/null
+++ b/uploader.scm
@@ -0,0 +1,76 @@
+;;; genenetwork-machines --- Guix configuration for genenetwork machines
+;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2022–2024 Frederick M. Muriithi <fredmanglis@gmail.com>
+;;;
+;;; This file is part of genenetwork-machines.
+;;;
+;;; genenetwork-machines is free software: you can redistribute it
+;;; and/or modify it under the terms of the GNU General Public License
+;;; as published by the Free Software Foundation, either version 3 of
+;;; the License, or (at your option) any later version.
+;;;
+;;; genenetwork-machines is distributed in the hope that it will be
+;;; useful, but WITHOUT ANY WARRANTY; without even the implied
+;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+;;; See the GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with genenetwork-machines.  If not, see
+;;; <https://www.gnu.org/licenses/>.
+
+(use-modules (gnu)
+             (genenetwork services genenetwork)
+             ((gnu packages admin) #:select (shepherd))
+             (gn services databases)
+             (gn packages genenetwork)
+             (gnu services databases)
+             (forge acme)
+             (forge nginx)
+             (forge socket))
+
+(operating-system
+  (host-name "genenetwork-uploader")
+  (timezone "UTC")
+  (locale "en_US.utf8")
+  (bootloader (bootloader-configuration
+               (bootloader grub-bootloader)
+               (targets (list "/dev/sdX"))))
+  (file-systems %base-file-systems)
+  (users %base-user-accounts)
+  (sudoers-file
+   (mixed-text-file "sudoers"
+                    "@include " %sudoers-specification
+                    "\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n"))
+  (packages %base-packages)
+  (services (cons* (service forge-nginx-service-type
+                            (forge-nginx-configuration
+                             (http-listen (forge-ip-socket
+                                           (ip "0.0.0.0")
+                                           (port 10890)))
+                             (https-listen (forge-ip-socket
+                                            (ip "0.0.0.0")
+                                            (port 10891)))))
+                   (service acme-service-type
+                            (acme-configuration
+                             (email "arunisaac@systemreboot.net")))
+                   (service genenetwork-service-type
+                            (genenetwork-configuration
+                             (genenetwork2 genenetwork2)
+                             (server-name "staging.genenetwork.org")
+                             (gn-auth-server-name "staging-auth.genenetwork.org")
+                             (gn2-port 10894)
+                             (gn3-port 10895)
+                             (gn-auth-port 10896)
+                             (sql-uri "mysql://webqtlout:webqtlout@127.0.0.1:3307/db_webqtl")
+                             (auth-db "/export/data/genenetwork-sqlite/auth.db")
+                             (xapian-db "/export/data/genenetwork-xapian")
+                             (genotype-files "/export/data/genenetwork/genotype_files")
+                             (sparql-endpoint "http://localhost:10892/sparql")
+                             (gn3-data-directory "/export/data/uploader/genenetwork3")))
+                   (service gn-uploader-service-type
+                            (gn-uploader-configuration
+                             (server-name "staging-uploader.genenetwork.org")
+                             (port 10897)
+                             (sql-uri "mysql://webqtlout:webqtlout@127.0.0.1:3307/db_webqtl")
+                             (data-directory "/export/data/uploader/gn-uploader")))
+                   %base-services)))