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authorMunyoki Kilyungi2024-05-07 19:27:44 +0300
committerMunyoki Kilyungi2024-05-14 21:22:04 +0300
commit77efaac7a25684f78bf45a02fab7dda9fc1df17a (patch)
tree152cbac8586d7b084041bb0e2048b4e1ff0e11f5 /qa-gn.scm
parent033a051d4f241e1f2c86ff6b646347ab23b6e0d5 (diff)
downloadgn-machines-77efaac7a25684f78bf45a02fab7dda9fc1df17a.tar.gz
Add guix configuration for the LLM instance.
* qa-gn-deploy.sh: New file. * qa-gn.scm: New file. Co-authored-by: Alexander_Kabui <alexanderkabua@gmail.com> Co-authored-by: John Nduli <rookie101@jnduli.co.ke>
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+;;; qa-gn.scm ---
+;;; Copyright © 2024 Munyoki Kilyungi <me@bonfacemunyoki.com>
+;;; Copyright © 2024 Alexander Kabui <alexanderkabua@gmail.com>
+;;; Copyright © 2024 John Nduli <rookie101@jnduli.co.ke>
+;;;
+;;; This file is part of genenetwork-machines.
+;;;
+;;; This program is free software; you can redistribute it and/or
+;;; modify it under the terms of the GNU General Public License
+;;; as published by the Free Software Foundation; either version 3
+;;; of the License, or (at your option) any later version.
+;;;
+;;; This program is distributed in the hope that it will be useful,
+;;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+(use-modules (gnu)
+ ((gnu packages admin) #:select (shepherd))
+ ((gnu packages certs) #:select (nss-certs))
+ (gnu services databases)
+ (gnu build linux-container)
+ (genenetwork services genenetwork)
+ (gn services databases)
+ (guix packages)
+ (guix download)
+ (guix git)
+ (guix git-download)
+ (guix build-system python)
+ ((gn packages genenetwork) #:select (genenetwork2 genenetwork3 gn-auth))
+ (forge acme)
+ (forge nginx)
+ (forge socket))
+
+
+
+(operating-system
+ (host-name "qa-gn")
+ (timezone "UTC")
+ (locale "en_US.utf8")
+ (bootloader (bootloader-configuration
+ (bootloader grub-bootloader)
+ (targets (list "/dev/sdX"))))
+ (file-systems %base-file-systems)
+ (sudoers-file
+ (mixed-text-file "sudoers"
+ "@include " %sudoers-specification
+ "\nacme ALL = NOPASSWD: "
+ (file-append shepherd "/bin/herd")
+ " restart nginx\n"))
+ (packages (cons (specification->package "nss-certs") %base-packages))
+ (services
+ (cons*
+ (service genenetwork-service-type
+ (genenetwork-configuration
+ ;; Use the latest stable version of GN2/3 with the most
+ ;; recent LLM code.
+ (genenetwork2 (package
+ (inherit genenetwork2)
+ (name "genenetwork2")
+ (version "0")
+ (source
+ (git-checkout
+ (branch "feature/gnqa-system")
+ (url "https://github.com/genenetwork/genenetwork2.git")))))
+ (genenetwork3 (package
+ (inherit genenetwork3)
+ (name "genenetwork3")
+ (version "0")
+ (source
+ (git-checkout
+ (branch "feature/gnqa-api")
+ (url "https://github.com/genenetwork/genenetwork3.git")))))
+ (gn-auth (package
+ (inherit gn-auth)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.genenetwork.org/gn-auth")
+ (commit "de4a7f6bfa870a0e5fc4b1f381cb452ab1250210")))
+ (hash
+ (content-hash
+ (base32
+ "0dxanpgwgjil3g0qlkar7gg8znm9dpizcwkgbyvj0h44qnv1346k")))))
+ (propagated-inputs
+ (modify-inputs (package-propagated-inputs genenetwork3)
+ (append nss-certs)))
+ (arguments
+ `(#:tests? #f))))
+ (server-name "qa.genenetwork.org")
+ (gn-auth-server-name "qa-auth.genenetwork.org")
+ ;; XXX: We probably need to use the production server
+ ;; for this
+ (gn2-port 10904)
+ (gn3-port 10905)
+ (gn-auth-port 10906)
+ (sql-uri "mysql://webqtlout:webqtlout@127.0.0.1:3307/db_webqtl")
+ (auth-db "/export/data/genenetwork-sqlite/auth-qa.db")
+ (xapian-db "/export/data/genenetwork-xapian")
+ (genotype-files "/export/data/genenetwork/genotype_files")
+ (sparql-endpoint "http://localhost:9082/sparql")
+ (gn3-data-directory "/export/data/genenetwork3")
+ (llm-db "/export/data/genenetwork-sqlite/llm-qa.db")))
+ (service forge-nginx-service-type
+ (forge-nginx-configuration
+ (http-listen (forge-ip-socket
+ (ip "0.0.0.0")
+ (port 10907)))
+ (https-listen (forge-ip-socket
+ (ip "0.0.0.0")
+ (port 10908)))))
+ (service acme-service-type
+ (acme-configuration
+ (email "arunisaac@systemreboot.net")))
+ %base-services)))