Add new system container for local dev work.gn-local-development-container

* genenetwork-local-container.scm: New file.
* genenetwork-local-container.sh: Ditto.

1 files changed, 81 insertions, 0 deletions

diff --git a/genenetwork-local-container.sh b/genenetwork-local-container.sh
new file mode 100755
index 0000000..07d0662
--- /dev/null
+++ b/genenetwork-local-container.sh
@@ -0,0 +1,81 @@
+#! /bin/sh -e
+
+# genenetwork-machines --- Guix configuration for genenetwork machines
+# Copyright © 2025 Munyoki Kilyungi <me@bonfacemunyoki.com>
+#
+# This file is part of genenetwork-machines.
+#
+# genenetwork-machines is free software: you can redistribute it
+# and/or modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation, either version 3 of
+# the License, or (at your option) any later version.
+#
+# genenetwork-machines is distributed in the hope that it will be
+# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with genenetwork-machines.  If not, see
+# <https://www.gnu.org/licenses/>.
+
+# Build and install genenetwork production container on tux02.
+
+system_directories=("$HOME"/genenetwork/var/log
+		    "$HOME"/genenetwork/var/genenetwork
+		    "$HOME"/genenetwork/etc/genenetwork/conf
+		    "$HOME"/genenetwork/etc/genenetwork
+		    "$HOME"/genenetwork/var/lib/redis
+		    "$HOME"/genenetwork/var/lib/virtuoso
+		    "$HOME"/genenetwork/var/lib/xapian
+		    "$HOME"/genenetwork/var/lib/genenetwork-sqlite
+		    "$HOME"/genenetwork/var/lib/genenetwork-gnqa
+		    /tmp/local-container)
+
+for dir in "${system_directories[@]}"; do
+    if [[ ! -d $dir ]]; then
+	mkdir -p $dir
+    fi
+done
+
+gn_projects=(genenetwork2 genenetwork3)
+for project in "${gn_projects[@]}"; do
+    dir="${HOME}/genenetwork/${project}"
+    if [[ ! -d $dir ]]; then
+	git clone "git@github.com:genenetwork/${project}" $dir
+    fi
+done
+
+if [[ ! -d "${HOME}/genenetwork/gn-auth" ]]; then
+    git clone "https://git.genenetwork.org/gn-auth" "${HOME}/genenetwork/gn-auth"
+fi
+
+if [[ ! -d "${HOME}/genenetwork/gn-docs" ]]; then
+    git clone --bare "https://git.genenetwork.org/gn-docs" "${HOME}/genenetwork/gn-docs"
+fi
+
+container_script=$(guix system container \
+			--network \
+			--load-path=. \
+			--verbosity=3 \
+			--share="$HOME"/genenetwork/var/log=/var/log \
+			--share="$HOME"/genenetwork/var/genenetwork=/var/genenetwork \
+			--share="$HOME"/genenetwork/etc/genenetwork/conf=/etc/genenetwork/conf \
+			--share="$HOME"/genenetwork/etc/genenetwork=/etc/genenetwork \
+			--share="$HOME"/genenetwork/var/lib/redis=/var/lib/redis \
+			--share="$HOME"/genenetwork/var/lib/virtuoso/=/var/lib/virtuoso \
+			--share="$HOME"/genenetwork/genenetwork2=/genenetwork2 \
+			--share="$HOME"/genenetwork/genenetwork3=/genenetwork3 \
+			--share="$HOME"/genenetwork/gn-auth=/gn-auth \
+			--share="$HOME"/genenetwork/var/lib/xapian=/var/lib/xapian \
+			--share="$HOME"/genenetwork/var/lib/genenetwork-sqlite=/var/lib/genenetwork-sqlite \
+			--share="$HOME"/genenetwork/var/lib/genenetwork-gnqa=/var/lib/genenetwork-gnqa \
+			--share=/tmp/local-container=/tmp \
+			--share="$HOME"/genenetwork/gn-docs=/var/lib/gn-docs \
+			--share=/run/mysqld=/run/mysqld \
+			genenetwork-local-container.scm)
+
+echo $container_script
+sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-local-container
+sudo ln --force --symbolic /usr/local/bin/genenetwork-local-container /var/guix/gcroots
+