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authorMunyoki Kilyungi2024-12-20 16:50:30 +0300
committerMunyoki Kilyungi2025-01-06 22:24:58 +0300
commitd32c16f9f551f92f07092c9cbee29cbefa162d09 (patch)
treebbb7af5e74a2a03194cd8679218fa868f65c643d
parent9d53f097a2cba26ab3f81060f3a133c69a17e186 (diff)
downloadgn-machines-d32c16f9f551f92f07092c9cbee29cbefa162d09.tar.gz
Explicitly set "RSCRIPT" in gn3 g-exp.
-rw-r--r--genenetwork-development.scm5
1 files changed, 5 insertions, 0 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index d971a8c..c970332 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -518,6 +518,11 @@ server described by CONFIG, a <genenetwork-configuration> object."
                                          "LLM_DB_PATH=\"" llm-db-path "\"\n"))
               (setenv "HOME" "/tmp")
               (setenv "GN3_SECRETS" #$gn3-secrets)
+              (setenv "RSCRIPT" #$(file-append
+                                   (profile
+                                    (content (package->development-manifest genenetwork3))
+                                    (allow-collisions? #t))
+                                   "/bin/Rscript"))
               ;; Run genenetwork3.
               (with-directory-excursion "genenetwork3"
                 (show-head-commit)