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| author | Frederick Muriuki Muriithi | 2024-07-05 09:44:23 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-07-12 11:29:01 -0500 |
| commit | becef6838d751640ab2b89794e113987dcd23572 (patch) | |
| tree | 7e6dee793bb51c54651885e059d884134346fe35 | |
| parent | b03f187d92258a92a1e60686e1ec45c21ab995d4 (diff) | |
| download | gn-machines-becef6838d751640ab2b89794e113987dcd23572.tar.gz | |
Extend the genenetwork-service-type with the mcron indexer service
Add the scheduled indexer service to the genenetwork-service-type. This will run the indexer script every hour.
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 9 | ||||
| -rw-r--r-- | uploader.scm | 2 |
2 files changed, 9 insertions, 2 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index 6c08703..5dd7b6b 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -467,6 +467,12 @@ a @code{<genenetwork-configuration>} record." (number->string gn-auth-port) ";") "proxy_set_header Host $host;"))))))))) +(define (genenetwork-mcron-jobs config) + (list #~(job '(next-hour) + #$(program-file "build-xapian-index-cron-gexp" + (build-xapian-index-cron-gexp config)) + #:user "root"))) + (define genenetwork-service-type (service-type (name 'genenetwork) @@ -479,7 +485,8 @@ a @code{<genenetwork-configuration>} record." (service-extension gunicorn-service-type genenetwork-gunicorn-apps) (service-extension forge-nginx-service-type - genenetwork-nginx-server-blocks))) + genenetwork-nginx-server-blocks) + (service-extension mcron-service-type genenetwork-mcron-jobs))) (default-value (genenetwork-configuration)))) (define (gn-uploader-activation config) diff --git a/uploader.scm b/uploader.scm index 4120730..5b60de9 100644 --- a/uploader.scm +++ b/uploader.scm @@ -64,7 +64,7 @@ (auth-db "/export/data/genenetwork-sqlite/auth.db") (xapian-db "/export/data/genenetwork-xapian") (genotype-files "/export/data/genenetwork/genotype_files") - (sparql-endpoint "http://localhost:10892/sparql") + (sparql-endpoint "http://localhost:10893/sparql") (gn3-data-directory "/export/data/uploader/genenetwork3") (gn2-secrets "/etc/genenetwork/genenetwork2") (gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py") |