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authorMunyoki Kilyungi2024-06-19 11:02:48 +0300
committerMunyoki Kilyungi2024-06-19 19:18:17 +0300
commita06f84a35defe18e99cc70de8fb87549726f88eb (patch)
tree128d064ca5fbae6aa5af2cb047a393672ccdb9f6
parent1a6c7982d40357374fe79b9ca916f85a55988512 (diff)
downloadgn-machines-a06f84a35defe18e99cc70de8fb87549726f88eb.tar.gz
Replace tabs with white spaces.
* genenetwork-development.scm: Run "M-x untabify".
-rw-r--r--genenetwork-development.scm82
1 files changed, 41 insertions, 41 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index a015154..5fafc12 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -252,7 +252,7 @@ genenetwork3 source from the latest commit of @var{project}."
                 (setenv "PYTHONPATH" (getcwd))
                 (invoke "./scripts/index-genenetwork" "create-xapian-index"
                         xapian-build-directory
-			"mysql://webqtlout:webqtlout@localhost/db_webqtl"
+                        "mysql://webqtlout:webqtlout@localhost/db_webqtl"
                         "http://localhost:9082/sparql")
                 ;; Stop genenetwork3, replace old xapian index and
                 ;; start genenetwork3.
@@ -351,9 +351,9 @@ genenetwork3 source from the latest commit of @var{project}."
                                                     (module '(genenetwork3-package))
                                                     (name 'genenetwork3)))
                                  #:guix-daemon-uri %guix-daemon-uri))
-			   ;; If tests run successfully, redeploy
-			   ;; genenetwork3 and trigger genenetwork2 tests.
-			   (after (with-imported-modules '((guix build utils))
+                           ;; If tests run successfully, redeploy
+                           ;; genenetwork3 and trigger genenetwork2 tests.
+                           (after (with-imported-modules '((guix build utils))
                                     #~(begin
                                         (use-modules (guix build utils))
 
@@ -379,7 +379,7 @@ genenetwork3 source from the latest commit of @var{project}."
                            (run (build-xapian-index-gexp this-forge-project))
                            (trigger? #f))))
            (ci-jobs-trigger 'webhook))
-	  (forge-project
+          (forge-project
            (name "gn-auth")
            (repository gn-auth-repository)
            (ci-jobs (list (forge-laminar-job
@@ -394,7 +394,7 @@ genenetwork3 source from the latest commit of @var{project}."
                                                     (name 'gn-auth)))
                                  #:guix-daemon-uri %guix-daemon-uri))
                            ;; If unit tests pass, restart the auth server.
-			   (after (with-imported-modules '((guix build utils))
+                           (after (with-imported-modules '((guix build utils))
                                     #~(begin
                                         (use-modules (guix build utils))
 
@@ -402,7 +402,7 @@ genenetwork3 source from the latest commit of @var{project}."
                                           (invoke #$sudo
                                                   #$(file-append shepherd "/bin/herd")
                                                   "restart" "gn-auth")
-					  (invoke #$(file-append laminar "/bin/laminarc")
+                                          (invoke #$(file-append laminar "/bin/laminarc")
                                                   "queue" "genenetwork2"))))))
                           (forge-laminar-job
                            (name "gn-auth-all-tests")
@@ -457,27 +457,27 @@ server described by CONFIG, a <genenetwork-configuration> object."
             (setenv "GN2_PROFILE" #$(profile
                                      (content (package->development-manifest genenetwork2))
                                      (allow-collisions? #t)))
-	    (setenv "GN_SERVER_URL" "https://cd.genenetwork.org/api3/")
-	    (setenv "GN3_LOCAL_URL"
-		    #$(string-append "http://localhost:"
-				     (number->string gn3-port)))
+            (setenv "GN_SERVER_URL" "https://cd.genenetwork.org/api3/")
+            (setenv "GN3_LOCAL_URL"
+                    #$(string-append "http://localhost:"
+                                     (number->string gn3-port)))
             (setenv "GENENETWORK_FILES" #$genotype-files)
-	    (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl")
+            (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl")
             (setenv "HOME" "/tmp")
             (setenv "NO_REDIS" "no-redis")
-	    (setenv "RUST_BACKTRACE" "1")
-
-	    (setenv
-	     "GN2_SETTINGS"
-	     #$(mixed-text-file "gn2.conf"
-				"GN2_SECRETS=\"" gn2-secrets "/gn2-secrets.py\"\n"
-				"GN3_LOCAL_URL=\""
-				(string-append "http://localhost:"
-					       (number->string gn3-port))
-				"\"\n"
-				"GN_SERVER_URL=\"https://cd.genenetwork.org/api3/\"\n"
-				"AUTH_SERVER_URL=\"https://auth-cd.genenetwork.org/\"\n"
-				"SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl\"\n"
+            (setenv "RUST_BACKTRACE" "1")
+
+            (setenv
+             "GN2_SETTINGS"
+             #$(mixed-text-file "gn2.conf"
+                                "GN2_SECRETS=\"" gn2-secrets "/gn2-secrets.py\"\n"
+                                "GN3_LOCAL_URL=\""
+                                (string-append "http://localhost:"
+                                               (number->string gn3-port))
+                                "\"\n"
+                                "GN_SERVER_URL=\"https://cd.genenetwork.org/api3/\"\n"
+                                "AUTH_SERVER_URL=\"https://auth-cd.genenetwork.org/\"\n"
+                                "SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl\"\n"
                                 "SSL_PRIVATE_KEY=\"" gn2-secrets "/gn2-ssl-private-key.pem\"\n"
                                 "AUTH_SERVER_SSL_PUBLIC_KEY=\"" gn2-secrets "/gn-auth-ssl-public-key.pem\"\n"))
 
@@ -520,7 +520,7 @@ server described by CONFIG, a <genenetwork-configuration> object."
                                          "AUTH_DB=\"" auth-db-path "\"\n"
                                          "LLM_DB_PATH=\"" llm-db-path "\"\n"))
               (setenv "HOME" "/tmp")
-	      (setenv "GN3_SECRETS" #$gn3-secrets)
+              (setenv "GN3_SECRETS" #$gn3-secrets)
               ;; Run genenetwork3.
               (with-directory-excursion "genenetwork3"
                 (show-head-commit)
@@ -561,12 +561,12 @@ server described by CONFIG, a <genenetwork-configuration> object."
               ;; Configure gn-auth.
               (setenv "GN_AUTH_CONF"
                       #$(mixed-text-file "gn-auth.conf"
-					 "AUTH_DB=\"" auth-db-path "\"\n"
+                                         "AUTH_DB=\"" auth-db-path "\"\n"
                                          "GN_AUTH_SECRETS=\"" gn-auth-secrets "/gn-auth-secrets.py\"\n"
                                          "CLIENTS_SSL_PUBLIC_KEYS_DIR=\"" gn-auth-secrets "/clients-public-keys\"\n"
                                          "SSL_PRIVATE_KEY=\"" gn-auth-secrets "/gn-auth-ssl-private-key.pem\"\n"))
               (setenv "HOME" "/tmp")
-	      (setenv "AUTHLIB_INSECURE_TRANSPORT" "true")
+              (setenv "AUTHLIB_INSECURE_TRANSPORT" "true")
               ;; Run gn-auth.
               (with-directory-excursion "gn-auth"
                 (show-head-commit)
@@ -600,7 +600,7 @@ described by CONFIG, a <genenetwork-configuration> object."
                                                 (source "/run/mysqld")
                                                 (target source)
                                                 (writable? #t))
-					       (file-system-mapping
+                                               (file-system-mapping
                                                 (source gn2-secrets)
                                                 (target source)
                                                 (writable? #t)))
@@ -632,7 +632,7 @@ described by CONFIG, a <genenetwork-configuration> object."
                                                (file-system-mapping
                                                 (source xapian-db-path)
                                                 (target source))
-					       (file-system-mapping
+                                               (file-system-mapping
                                                 (source "/etc/genenetwork/conf/gn3")
                                                 (target source)
                                                 (writable? #t))
@@ -650,7 +650,7 @@ described by CONFIG, a <genenetwork-configuration> object."
                      #:group "genenetwork"
                      #:log-file "/var/log/cd/genenetwork3.log"))
            (stop #~(make-kill-destructor)))
-	  (shepherd-service
+          (shepherd-service
            (documentation "Run gn-auth development server.")
            (provision '(gn-auth))
            (requirement '(networking))
@@ -673,7 +673,7 @@ described by CONFIG, a <genenetwork-configuration> object."
                                                 (source auth-db-path)
                                                 (target source)
                                                 (writable? #t))
-					       (file-system-mapping
+                                               (file-system-mapping
                                                 (source gn-auth-secrets)
                                                 (target source)
                                                 (writable? #t)))
@@ -1060,7 +1060,7 @@ GeneNetwork2 and GeneNetwork3 are listening on."
            (body (list (string-append "proxy_pass http://localhost:"
                                       (number->string gn2-port) ";")
                        "proxy_set_header Host $host;"
-		       "proxy_set_header X-Forwarded-Proto $scheme;")))
+                       "proxy_set_header X-Forwarded-Proto $scheme;")))
           (nginx-location-configuration
            ;; Reverse proxy genenetwork3.
            (uri "/api3")
@@ -1131,10 +1131,10 @@ gn-auth."
    (server-name '("auth-cd.genenetwork.org"))
    (locations
     (list (nginx-location-configuration
-	   (uri "/")
+           (uri "/")
            (body (list (string-append "proxy_pass http://localhost:"
-				      (number->string %gn-auth-port)
-				      ";")
+                                      (number->string %gn-auth-port)
+                                      ";")
                        "proxy_set_header Host $host;")))))))
 
 ;; Port on which webhook is listening
@@ -1209,16 +1209,16 @@ gn-auth."
                    (service redis-service-type)
                    (service virtuoso-service-type
                             (virtuoso-configuration
-			     (number-of-buffers 4000000)
-			     (maximum-dirty-buffers 3000000)
+                             (number-of-buffers 4000000)
+                             (maximum-dirty-buffers 3000000)
                              (server-port 9081)
-			     (dirs-allowed "/var/lib/data")
+                             (dirs-allowed "/var/lib/data")
                              (http-server-port %virtuoso-sparql-port)))
                    (service genenetwork-service-type
                             (genenetwork-configuration
                              (gn2-port %genenetwork2-port)
                              (gn3-port %genenetwork3-port)
-			     (gn-auth-port %gn-auth-port)
+                             (gn-auth-port %gn-auth-port)
                              (gn2-secrets "/etc/genenetwork/conf/gn2")
                              (gn3-secrets "/etc/genenetwork/conf/gn3/secrets.py")
                              (gn-auth-secrets "/etc/genenetwork/conf/gn-auth")
@@ -1267,7 +1267,7 @@ gn-auth."
                                      "localhost:9089" %webhook-port
                                      (list 'gn-bioinformatics))
                                     (tissue-reverse-proxy-server-block)
-				    (gn-auth-reverse-proxy-server-block)))))
+                                    (gn-auth-reverse-proxy-server-block)))))
                    (service acme-service-type
                             (acme-configuration
                              (email "arunisaac@systemreboot.net")))