diff options
| author | Munyoki Kilyungi | 2025-05-06 20:50:09 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2025-05-06 20:50:09 +0300 |
| commit | 3020472f1d6cd0ce909a245631c465acfcc308ba (patch) | |
| tree | dc5d6d716e34ec5292f5835d5d28e04ae8920e26 | |
| parent | 32055ca38c3d2807e58e8718a6de39d37b8ad362 (diff) | |
| download | gn-machines-3020472f1d6cd0ce909a245631c465acfcc308ba.tar.gz | |
Use "db_webqtl_local" for the database.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | genenetwork-development.scm | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm index f841255..0b22f77 100644 --- a/genenetwork-development.scm +++ b/genenetwork-development.scm @@ -241,7 +241,7 @@ executed." (setenv "GN3_LOCAL_URL" (string-append "http://localhost:" (number->string #$gn3-port))) (setenv "GENENETWORK_FILES" #$genotype-files) (setenv "HOME" "/tmp") - (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock") + (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl_local?unix_socket=/run/mysqld/mysqld.sock") (chdir "genenetwork2") ;; XXXX: FIXME: R/Qtl tests fail because files are generated in ;; the "/tmp" directory. Currently, "/tmp" is mapped by gn2/gn3 @@ -277,7 +277,7 @@ genenetwork3 source from the latest commit of @var{project}." (setenv "PYTHONPATH" (getcwd)) (invoke "./scripts/index-genenetwork" "create-xapian-index" xapian-build-directory - "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock" + "mysql://webqtlout:webqtlout@localhost/db_webqtl_local?unix_socket=/run/mysqld/mysqld.sock" "http://localhost:9082/sparql") ;; Stop genenetwork3, replace old xapian index and ;; start genenetwork3. @@ -322,7 +322,7 @@ genenetwork3 source from the latest commit of @var{project}." (system* (string-append gn3-dir "/scripts/index-genenetwork") "is-data-modified" #$%xapian-directory - "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock" + "mysql://webqtlout:webqtlout@localhost/db_webqtl_local?unix_socket=/run/mysqld/mysqld.sock" "http://localhost:9082/sparql")))) (setenv "LAMINAR_REASON" "Nightly xapian index rebuild") (invoke #$(file-append laminar "/bin/laminarc") @@ -505,7 +505,7 @@ server described by CONFIG, a <genenetwork-configuration> object." "\"\n" "GN_SERVER_URL=\"https://cd.genenetwork.org/api3/\"\n" "AUTH_SERVER_URL=\"https://auth-cd.genenetwork.org/\"\n" - "SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock\"\n" + "SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl_local?unix_socket=/run/mysqld/mysqld.sock\"\n" "SSL_PRIVATE_KEY=\"" gn2-secrets "/gn2-ssl-private-key.pem\"\n" "AUTH_SERVER_SSL_PUBLIC_KEY=\"" gn2-secrets "/gn-auth-ssl-public-key.pem\"\n")) |