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| author | Munyoki Kilyungi | 2025-05-06 21:37:59 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2025-05-06 21:37:59 +0300 |
| commit | 034cb3858ad0eb8d3f576ae3904391c48ba37ae8 (patch) | |
| tree | 6d7eeacfa44e2b0fa5c50f0bf4bc5bcb54dc8eee | |
| parent | 3020472f1d6cd0ce909a245631c465acfcc308ba (diff) | |
| download | gn-machines-034cb3858ad0eb8d3f576ae3904391c48ba37ae8.tar.gz | |
Verify that the profile has the guix-bioinformatic channel.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | genenetwork-local-container.sh | 9 |
1 files changed, 2 insertions, 7 deletions
diff --git a/genenetwork-local-container.sh b/genenetwork-local-container.sh index 0875625..8e599e4 100755 --- a/genenetwork-local-container.sh +++ b/genenetwork-local-container.sh @@ -73,14 +73,9 @@ for cmd in git guix sudo diff cp grep; do fi done -guix_output=$(guix describe) # Check for gn-bioinformatics channel -echo "$guix_output" | grep -q "gn-bioinformatics" -if [ $? = 1 ]; then - log ERROR "$guix_output" - log ERROR "Please make sure your current profile has gn-bioinformatics" - exit 1 -fi +guix describe | grep gn-bioinformatics &> /dev/null && log "INFO" "guix guix-informatics $(guix describe | grep gn-bioinformatics | cut -d ' ' -f 4)" || log "ERROR" "Please make sure your current profile has gn-bioinformatics" + # Validate HOME is set if [ -z "${HOME:-}" ]; then log "ERROR" "HOME environment variable is not set" |