diff options
| -rw-r--r-- | .guix-channel | 20 | ||||
| -rw-r--r-- | .guix/modules/gn-libs.scm | 42 | ||||
| l--------- | guix.scm | 1 |
3 files changed, 63 insertions, 0 deletions
diff --git a/.guix-channel b/.guix-channel new file mode 100644 index 0000000..9476e74 --- /dev/null +++ b/.guix-channel @@ -0,0 +1,20 @@ +(channel + (version 0) + (directory ".guix/modules") + (dependencies + (channel + (name guix-bioinformatics) + (url "https://git.genenetwork.org/guix-bioinformatics") + (branch "master")) + ;; FIXME: guix-bioinformatics depends on guix-past. So, there + ;; should be no reason to explicitly depend on guix-past. But, the + ;; channel does not build otherwise. This is probably a guix bug. + (channel + (name guix-past) + (url "https://gitlab.inria.fr/guix-hpc/guix-past") + (introduction + (channel-introduction + (version 0) + (commit "0c119db2ea86a389769f4d2b9c6f5c41c027e336") + (signer + "3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5")))))) diff --git a/.guix/modules/gn-libs.scm b/.guix/modules/gn-libs.scm new file mode 100644 index 0000000..82747b6 --- /dev/null +++ b/.guix/modules/gn-libs.scm @@ -0,0 +1,42 @@ +(define-module (gn-libs) + #:use-module ((gn packages genenetwork) #:select (gn-libs) #:prefix gn:) + + #:use-module (guix gexp) + #:use-module (guix utils) + #:use-module (guix packages) + #:use-module (guix git-download)) + +(define %source-dir (dirname (dirname (current-source-directory)))) + +(define vcs-file? + (or (git-predicate %source-dir) + (const #t))) + +(define-public gn-libs + (package + (inherit gn:gn-libs) + (source + (local-file "../.." + "gn-libs-checkout" + #:recursive? #t + #:select? vcs-file?)))) + +(define-public gn-libs-all-tests + (package + (inherit gn-libs) + (arguments + (substitute-keyword-arguments (package-arguments gn-libs) + ((#:phases phases #~%standard-phases) + #~(modify-phases #$phases + (add-before 'build 'pylint + (lambda _ + (invoke "pylint" "tests" "gn_libs"))) + (add-after 'pylint 'mypy + (lambda _ + (invoke "mypy" "--show-erro-codes" "."))))))) + (native-inputs + (modify-inputs (package-native-inputs gn-libs) + (prepend python-mypy) + (prepend python-pylint))))) + +gn-libs diff --git a/guix.scm b/guix.scm new file mode 120000 index 0000000..0376339 --- /dev/null +++ b/guix.scm @@ -0,0 +1 @@ +.guix/modules/gn-libs.scm
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