Initialise with smoke tests for various GeneNetwork services.

The code in this commit was written by claude code, and is yet to be
reviewed. Expect changes once the code has been reviewed.

1 files changed, 89 insertions, 0 deletions

diff --git a/conftest.py b/conftest.py
new file mode 100644
index 0000000..5b5eb87
--- /dev/null
+++ b/conftest.py
@@ -0,0 +1,89 @@
+"""
+Shared fixtures for the GeneNetwork integration test suite.
+
+Base URLs default to the CD environment.  Override via environment variables:
+
+    GN2_BASE_URL     e.g. https://genenetwork.org          (default: CD)
+    GN3_BASE_URL     e.g. https://genenetwork.org/api3     (default: CD)
+    GN_AUTH_BASE_URL e.g. https://auth.genenetwork.org     (default: CD)
+
+For auth-flow tests also set:
+
+    GN_TEST_EMAIL    registered test-user e-mail address
+    GN_TEST_PASSWORD password for GN_TEST_EMAIL
+    GN_OAUTH2_CLIENT_ID     OAuth2 client UUID
+    GN_OAUTH2_CLIENT_SECRET OAuth2 client secret
+"""
+
+import os
+import pytest
+import requests
+
+
+_GN2_DEFAULT = "https://cd.genenetwork.org"
+_GN3_DEFAULT = "https://cd.genenetwork.org/api3"
+_GN_AUTH_DEFAULT = "https://auth-cd.genenetwork.org"
+
+
+@pytest.fixture(scope="session")
+def gn2_url() -> str:
+    return os.environ.get("GN2_BASE_URL", _GN2_DEFAULT).rstrip("/")
+
+
+@pytest.fixture(scope="session")
+def gn3_url() -> str:
+    return os.environ.get("GN3_BASE_URL", _GN3_DEFAULT).rstrip("/")
+
+
+@pytest.fixture(scope="session")
+def gn_auth_url() -> str:
+    return os.environ.get("GN_AUTH_BASE_URL", _GN_AUTH_DEFAULT).rstrip("/")
+
+
+@pytest.fixture(scope="session")
+def http() -> requests.Session:
+    """Shared requests.Session; sets a conservative timeout for all calls."""
+    with requests.Session() as session:
+        session.headers.update({"Accept": "application/json"})
+        yield session
+
+
+# ---------------------------------------------------------------------------
+# Auth-flow helpers (Phase 2 tests)
+# ---------------------------------------------------------------------------
+
+@pytest.fixture(scope="session")
+def oauth2_credentials():
+    """Returns (email, password, client_id, client_secret) or skips the test."""
+    email = os.environ.get("GN_TEST_EMAIL")
+    password = os.environ.get("GN_TEST_PASSWORD")
+    client_id = os.environ.get("GN_OAUTH2_CLIENT_ID")
+    client_secret = os.environ.get("GN_OAUTH2_CLIENT_SECRET")
+    if not all([email, password, client_id, client_secret]):
+        pytest.skip(
+            "Set GN_TEST_EMAIL, GN_TEST_PASSWORD, GN_OAUTH2_CLIENT_ID, and "
+            "GN_OAUTH2_CLIENT_SECRET to run auth-flow tests."
+        )
+    return email, password, client_id, client_secret
+
+
+@pytest.fixture(scope="session")
+def access_token(gn_auth_url, oauth2_credentials, http):
+    """Obtains a Bearer token via the password grant and caches it for the session."""
+    email, password, client_id, client_secret = oauth2_credentials
+    resp = http.post(
+        f"{gn_auth_url}/auth/token",
+        json={
+            "grant_type": "password",
+            "username": email,
+            "password": password,
+            "scope": "profile group resource",
+            "client_id": client_id,
+            "client_secret": client_secret,
+        },
+        timeout=30,
+    )
+    assert resp.status_code == 200, f"Token request failed: {resp.text}"
+    data = resp.json()
+    assert "access_token" in data
+    return data["access_token"]