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-rw-r--r--web/view/markdown.scm136
-rw-r--r--web/view/view.scm4
2 files changed, 110 insertions, 30 deletions
diff --git a/web/view/markdown.scm b/web/view/markdown.scm
index 2af2b26..6aa2935 100644
--- a/web/view/markdown.scm
+++ b/web/view/markdown.scm
@@ -6,50 +6,126 @@
#:use-module (ice-9 receive)
#:use-module (ice-9 string-fun)
#:use-module (ice-9 textual-ports)
+ #:use-module (ice-9 exceptions)
+ #:use-module (ice-9 popen)
+ #:use-module (ice-9 rdelim)
#:use-module (sxml simple)
#:use-module (web client)
#:use-module (web uri)
#:use-module (web request)
#:use-module (web sxml)
#:use-module (commonmark)
-
- #:export (markdown-file->sxml
- markdown-github->sxml
- fetch-raw-file)
- )
-
+ #:export (markdown-file->sxml markdown-github->sxml fetch-file
+ fetch-raw-file commit-file git-invoke))
(define (markdown-file->sxml fn)
"Parse a local file"
- (commonmark->sxml
- (call-with-input-file fn
- get-string-all)))
-
-;; --- fetch github style URLs
+ (commonmark->sxml (call-with-input-file fn
+ get-string-all)))
(define (fetch-raw-file url)
(receive (response-status response-body)
- (http-request url)
- response-body))
+ (http-request url) response-body))
-;; https://github.com/genenetwork/gn-docs/master/general/brand/aging/home.md
-;; https://raw.githubusercontent.com/genenetwork/gn-docs/master/general/brand/aging/home.md
-;; https://github.com/genenetwork/gn-docs/edit/master/general/brand/aging/home.md
+(define* (form-github-raw-url project repo page #:optional (branch "master"))
+ (string-append "https://raw.githubusercontent.com/"
+ project
+ "/"
+ repo
+ "/"
+ branch
+ "/"
+ (string-join page "/")))
-(define (form-github-raw-url project repo page)
- (string-append "https://raw.githubusercontent.com/" project "/" repo "/master/" (string-join page "/")))
-
-(define (form-github-edit-url project repo page)
- (string-append "https://github.com/" project "/" repo "/edit/master/" (string-join page "/")))
+(define* (form-github-edit-url project repo page #:optional (branch "master"))
+ (string-append "https://github.com/"
+ project
+ "/"
+ repo
+ "/edit/"
+ branch
+ "/"
+ (string-join page "/")))
(define (markdown-github->sxml path)
"Parse a github markdown file that is formed like genenetwork/gn-docs/general/brand/aging/home.md"
- (match-let (((project repo page ...) (string-split path #\/)))
- `(div (@ (class "markdown"))
- ,(commonmark->sxml
- (fetch-raw-file (pk (form-github-raw-url project repo (pk page)))))
- (p
- (div (@ (class "button-align-right"))
- (a (@ (href ,(form-github-edit-url project repo page)) (role "button")) "edit")))
- (br)
- (br))))
+ (match-let (((project repo page ...)
+ (string-split path #\/)))
+ `(div (@ (class "markdown"))
+ ,(commonmark->sxml (fetch-raw-file (pk (form-github-raw-url
+ project repo
+ (pk page)))))
+ (p (div (@ (class "button-align-right"))
+ (a (@ (href ,(form-github-edit-url project repo
+ page))
+ (role "button")) "edit")))
+ (br)
+ (br))))
+
+(define (fetch-file repo query-path)
+ (let* ((abs-path (format #f "~a/~a" repo query-path)))
+ (if (file-exists? abs-path)
+ (let* ((full-path (canonicalize-path abs-path))
+ (content (call-with-input-file full-path
+ get-string-all))
+ (commit-sha (get-latest-commit-sha1 repo)))
+ `(("file_path" unquote query-path)
+ ("content" unquote content)
+ ("hash" unquote commit-sha)))
+ (throw 'file-error
+ (format #f "~a does not exists" abs-path)))))
+
+(define (git-invoke repo-path . args)
+ (apply system* "git" "-C" repo-path args))
+
+(define (git-repository? repo-path)
+ (let ((data (git-invoke repo-path "rev-parse")))
+ (zero? data)))
+
+(define (get-latest-commit-sha1 repo-path)
+ (let* ((output-port (open-input-pipe (string-append "git -C " repo-path
+ " log -n 1 --pretty=format:%H HEAD")))
+ (commit-sha (read-line output-port)))
+ (close-port output-port) commit-sha))
+
+(define* (commit-file repo
+ file-path
+ content
+ commit-message
+ username
+ email
+ #:optional (prev-commit ""))
+ (unless (string=? prev-commit
+ (get-latest-commit-sha1 repo))
+ (throw 'system-error
+ (format #f
+ "Commits do no match.Please pull in latest changes for current * ~a * and prev * ~a * "
+ (get-latest-commit-sha1 repo) prev-commit)))
+ (if (git-repository? repo)
+ (match (file-exists? (format #f "~a/~a" repo file-path))
+ (#t (with-output-to-file (format #f "~a/~a" repo file-path)
+ (lambda ()
+ (display content)))
+ (let* ((git-add-file (git-invoke repo "add" file-path))
+ (git-commit-file (git-invoke repo
+ "commit"
+ "-m"
+ commit-message
+ "-m"
+ " * Commit made via the GN Markdown Editor"
+ "--author"
+ (format #f "~a <~a>" username email)))
+ (git-commit-sha (get-latest-commit-sha1 repo)))
+ (if (zero? git-commit-file)
+ `(("status" . "201")
+ ("message" . "committed file successfully")
+ ("content" . ,content)
+ ("commit_sha" . ,git-commit-sha)
+ ("commit_message" . ,commit-message))
+ `(("status" . "200")
+ ("message" . "Nothing to commit, working tree clean")
+ ("commit_sha" . ,git-commit-sha)))))
+ (#f (throw 'system-error
+ (format #f "~a File does not exist error" file-path))))
+ (throw 'system-error
+ (format #f "~a is no a git repo" repo))))
diff --git a/web/view/view.scm b/web/view/view.scm
index 4584cf8..4300863 100644
--- a/web/view/view.scm
+++ b/web/view/view.scm
@@ -10,6 +10,7 @@
#:use-module (web view markdown)
#:use-module (web view brand msk)
#:use-module (web view brand aging)
+ #:use-module (web templates genenetwork)
#:export (view-brand))
@@ -45,6 +46,9 @@ data to benefit from the power of integrated datasets, please contact:")
(define* (view-brand path)
(match path
("aging" (view-aging))
+ ("gnqa" (default-gn-template
+ "genenetwork/gn-docs/general/brand/gnqa/gnqa.md"
+ "GeneNetwork Question and Answer System"))
( _ (msk-html #:info
`(
,(markdown-github->sxml "genenetwork/gn-docs/general/brand/msk/home.md")