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authorPjotr Prins2024-06-27 05:34:00 -0500
committerPjotr Prins2024-06-27 05:34:00 -0500
commit1b37b7738a4c756503ceaaa2645592521abd86f3 (patch)
tree6225963cfc2f582b005f78b390b141903028ee99 /scripts
parent9708991177a8450f8c17dad732f35a4b9c95c287 (diff)
downloadgn-guile-1b37b7738a4c756503ceaaa2645592521abd86f3.tar.gz
Run gemma-wrapper in a container
Diffstat (limited to 'scripts')
-rwxr-xr-xscripts/precompute/run-gemma.scm2
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/precompute/run-gemma.scm b/scripts/precompute/run-gemma.scm
index 48222b4..e6a4e26 100755
--- a/scripts/precompute/run-gemma.scm
+++ b/scripts/precompute/run-gemma.scm
@@ -9,7 +9,7 @@ Run from base dir with
and with some extra paths (for gemma)
-guix shell -C -F xz tar time parallel gemma coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp guile -L . -e main -s ./scripts/precompute/run-gemma.scm test
+~/opt/guix-pull/bin/guix shell -C -F xz tar time parallel coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp GEMMA_COMMAND=/gemma/bin/gemma-0.98.5-linux-static-debug guile -L . -e main -s ./scripts/precompute/run-gemma.scm
!#