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| author | Pjotr Prins | 2024-06-26 04:45:13 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-06-26 04:45:13 -0500 |
| commit | e4775ccc0c24351e1ee428cddb0f320022509137 (patch) | |
| tree | 868406d4c55b988a46bbd97e4c7fda543dcd2bc0 /scripts/precompute/precompute-hits.scm | |
| parent | 41735d8fbf4fbd0d137224f25b20cda6556ad484 (diff) | |
| download | gn-guile-e4775ccc0c24351e1ee428cddb0f320022509137.tar.gz | |
Read pheno JSON file and write out pheno file for gemma
Diffstat (limited to 'scripts/precompute/precompute-hits.scm')
| -rwxr-xr-x | scripts/precompute/precompute-hits.scm | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/precompute/precompute-hits.scm b/scripts/precompute/precompute-hits.scm index a18b33d..203dfbb 100755 --- a/scripts/precompute/precompute-hits.scm +++ b/scripts/precompute/precompute-hits.scm @@ -1,8 +1,8 @@ #! Precompute hits -This is the obsolete script to compute GEMMA directly from the DB. We have split out -this step into fetching traits and running gemma without DB. This allows scaling up -on HPC etc. +This is the *obsolete* script to compute GEMMA directly from the DB. We have split out +this step into separate steps for (1) fetching traits and (2) running gemma without DB. +This allows scaling up on HPC etc. Run from base dir with |