Adding GEMMA

1 files changed, 29 insertions, 0 deletions

diff --git a/gn/runner/gemma.scm b/gn/runner/gemma.scm
new file mode 100644
index 0000000..31a14f7
--- /dev/null
+++ b/gn/runner/gemma.scm
@@ -0,0 +1,29 @@
+(define-module (gn runner gemma)
+  #:use-module (json)
+  #:use-module (ice-9 match)
+  #:use-module (ice-9 format)
+  #:use-module (ice-9 iconv)
+  #:use-module (ice-9 receive)
+  #:use-module (ice-9 string-fun)
+
+  #:export (
+            run-gemma
+            ))
+
+(define (run-gemma data-id name trait-name traits)
+  (if name
+      (display (string-append "WE HAVE OUR BXD DATASET " name " and trait " trait-name " for precompute!\n")))
+  (display data-id)
+  (display traits)
+  (newline)
+  ;; ---- write phenotype file
+  (call-with-output-file "test.tmp"
+    (lambda (port)
+      (write 12 port)
+      (newline port)
+      (write "HELLO" port)
+      ))
+
+  ;; ---- start GEMMA precompute
+  (system "gemma")
+  )