blob: 840bd3ec24201a5393d02a599120eeab42414fa9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
|
# Tasks for Johannes
## Tags
* kanban: johannesm
* assigned: johannesm
* status: in progress
## Tasks
### Ongoing
* [] Get system into use in GN
* [] Draft outline paper
* [] Talk with Hao about publication on agent system and gain over GNQA
* [] Read literature for paper
### Later
* [~] Catch up on SPARQL
* [~] Catch up on LMDB
### Past
* [X] Make RAG script available for reuse and clean it with Bonface
* [X] Discuss with Bonface on how to get metadata for RAG
* [X] Pickle RAG -> not successful :)
* [X] Try out SPARQLWrapper
* [X] Optimize RAG
* [X] Integrate with RAG
* [X] Get actual metadata with SPARQL endpoint
* [X] Make RAG agentic -> AI system
* [X] Visit precompute issue
* [X] Find more affordable options for GNQA
* [X] Replace GNQA backend with Bonz
* [X] Test GPU
* [X] Test new AI system
* [X] Use GPU to make naturalization faster
* [X] Fix bugs and optimize AI system
* [X] Test and validate AI system working
* [X] Read up on performance evaluation for AI systems
* [X] Refetch all data from SPARQL
* [X] Preproces RDF for improved naturalization
* [X] Make asynchronous requests to server for naturalization
* [X] Document work on issue tracker
* [X] Package code AI system
* [X] Draft API endpoint
* [X] Test package and share with Bonz
* [X] Test AI system with descriptions, qtl and real biology questions
* [X] Compare performance of Claude and open model on GN data before finetuning
* [X] Look into system finetuning
* [X] Test performance gain
* [X] Think about how to show responses of agent system and GNQA in one UI
* [X] Get API working
|
