diff options
Diffstat (limited to 'issues/guix-ci-tests.gmi')
| -rw-r--r-- | issues/guix-ci-tests.gmi | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/issues/guix-ci-tests.gmi b/issues/guix-ci-tests.gmi new file mode 100644 index 0000000..ce56705 --- /dev/null +++ b/issues/guix-ci-tests.gmi @@ -0,0 +1,47 @@ +# Guix CI failure: guix-past build breaks due to missing (libchop) + +# Tags + +* assigned: bonfacem +* type: bug, infrastructure +* priority: high + +# Notes + +After fixing a permissions issue in the Laminar CI environment (/var/guix/profiles/per-user/laminar): + +``` +[laminar] Executing cfg/jobs/gn-libs.run Backtrace: 9 (primitive-load "/var/lib/laminar/cfg/jobs/gn-libs.run") In ice-9/boot-9.scm: 152:2 8 (with-fluid* _ _ _) In ice-9/eval.scm: 202:51 7 (_ #(#(#<directory (guile-user) 7fce0bc71c80> #<pro?> ?))) 293:34 6 (_ #(#(#<directory (guile-user) 7fce0bc71c80> #<pro?> ?))) In guix/inferior.scm: 1006:4 5 (inferior-for-channels _ #:cache-directory _ #:ttl _) In ice-9/boot-9.scm: 1752:10 4 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 690:37 3 (thunk) 1331:8 2 (call-with-build-handler #<procedure 7fce00e9f0c0 at g?> ?) In guix/inferior.scm: 951:2 1 (cached-channel-instance #<store-connection 256.100 7f?> ?) In ice-9/boot-9.scm: 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure mkdir: Permission denied: "/var/guix/profiles/per-user/laminar" +``` + +... by (inside the container) running: + +``` +mkdir -p /var/guix/profiles/per-user/laminar +chown -R laminar:laminar /var/guix/profiles/per-user/laminar +``` + +... the CI progressed further but now fails when attempting to build guix-past. The failure is caused by an unbound variable error for the module (libchop), indicating a mismatch or missing dependency in the pinned Guix channels. + +Error Log: + +``` +(exception unbound-variable (value #f) + (value "Unbound variable: ~S") + (value (libchop)) (value #f)) + +builder for /gnu/store/gx57wj08yv0x0g1r8rbnwcp2fc58lqvx-guix-past.drv +failed to produce output path +/gnu/store/n3q0sgqwm9mwvna5215npwmdfigfyr9f-guix-past + +cannot build derivation +/gnu/store/3fwagz1p9vv3h020lwb2ab52f6wj6z1g-profile.drv: +1 dependencies couldn't be built +``` + +# Resolution + +* Inside genenetwork-development.scm, manually create `/var/guix/profiles/per-user/laminar` if it doesn't exist. +* Update the relevant .guix-channel file to match channels in guix-bioinformatics. + +* closed |
