blob: ce567056409d2beb457f1d42e7ef3c7ac3d39854 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
# Guix CI failure: guix-past build breaks due to missing (libchop)
# Tags
* assigned: bonfacem
* type: bug, infrastructure
* priority: high
# Notes
After fixing a permissions issue in the Laminar CI environment (/var/guix/profiles/per-user/laminar):
```
[laminar] Executing cfg/jobs/gn-libs.run Backtrace: 9 (primitive-load "/var/lib/laminar/cfg/jobs/gn-libs.run") In ice-9/boot-9.scm: 152:2 8 (with-fluid* _ _ _) In ice-9/eval.scm: 202:51 7 (_ #(#(#<directory (guile-user) 7fce0bc71c80> #<pro?> ?))) 293:34 6 (_ #(#(#<directory (guile-user) 7fce0bc71c80> #<pro?> ?))) In guix/inferior.scm: 1006:4 5 (inferior-for-channels _ #:cache-directory _ #:ttl _) In ice-9/boot-9.scm: 1752:10 4 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 690:37 3 (thunk) 1331:8 2 (call-with-build-handler #<procedure 7fce00e9f0c0 at g?> ?) In guix/inferior.scm: 951:2 1 (cached-channel-instance #<store-connection 256.100 7f?> ?) In ice-9/boot-9.scm: 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure mkdir: Permission denied: "/var/guix/profiles/per-user/laminar"
```
... by (inside the container) running:
```
mkdir -p /var/guix/profiles/per-user/laminar
chown -R laminar:laminar /var/guix/profiles/per-user/laminar
```
... the CI progressed further but now fails when attempting to build guix-past. The failure is caused by an unbound variable error for the module (libchop), indicating a mismatch or missing dependency in the pinned Guix channels.
Error Log:
```
(exception unbound-variable (value #f)
(value "Unbound variable: ~S")
(value (libchop)) (value #f))
builder for /gnu/store/gx57wj08yv0x0g1r8rbnwcp2fc58lqvx-guix-past.drv
failed to produce output path
/gnu/store/n3q0sgqwm9mwvna5215npwmdfigfyr9f-guix-past
cannot build derivation
/gnu/store/3fwagz1p9vv3h020lwb2ab52f6wj6z1g-profile.drv:
1 dependencies couldn't be built
```
# Resolution
* Inside genenetwork-development.scm, manually create `/var/guix/profiles/per-user/laminar` if it doesn't exist.
* Update the relevant .guix-channel file to match channels in guix-bioinformatics.
* closed
|
