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authorPjotr Prins2025-05-08 08:02:29 +0200
committerPjotr Prins2025-05-08 08:02:35 +0200
commit545f73daca01c67067cca606bda06da0c40b8cfd (patch)
tree4c6819b0184474ca67f868258c01f81be30d8766 /topics/systems/mariadb/precompute-mapping-input-data.gmi
parent695fa00e927ac23f9b85bc9ed0e06072a2e33b06 (diff)
downloadgn-gemtext-545f73daca01c67067cca606bda06da0c40b8cfd.tar.gz
Pjotr tasks
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diff --git a/topics/systems/mariadb/precompute-mapping-input-data.gmi b/topics/systems/mariadb/precompute-mapping-input-data.gmi
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--- a/topics/systems/mariadb/precompute-mapping-input-data.gmi
+++ b/topics/systems/mariadb/precompute-mapping-input-data.gmi
@@ -53,6 +53,19 @@ More recent incarnations are at v8, including a PublishData version that can be
=> https://github.com/genenetwork/genenetwork2/tree/testing/scripts/maintenance
+Note that the locations are on space:
+
+```
+cd /mount/space2/lily-clone/acenteno/GN-Data
+ls -l
+python QTL_Reaper_v8_space_good.py 116
+--
+python UPDATE_Mean_MySQL_tab.py
+cd /mount/space2/lily-clone/gnshare/gn/web/webqtl/maintainance
+ls -l
+python QTL_Reaper_cal_lrs.py 7
+```
+
The first task is to prepare an update script that can run a set at a time and compute GEMMA output (instead of reaper).
The script first fetches inbredsets