From 545f73daca01c67067cca606bda06da0c40b8cfd Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 8 May 2025 08:02:29 +0200 Subject: Pjotr tasks --- topics/systems/mariadb/precompute-mapping-input-data.gmi | 13 +++++++++++++ 1 file changed, 13 insertions(+) (limited to 'topics/systems/mariadb/precompute-mapping-input-data.gmi') diff --git a/topics/systems/mariadb/precompute-mapping-input-data.gmi b/topics/systems/mariadb/precompute-mapping-input-data.gmi index 24b052c..977120d 100644 --- a/topics/systems/mariadb/precompute-mapping-input-data.gmi +++ b/topics/systems/mariadb/precompute-mapping-input-data.gmi @@ -53,6 +53,19 @@ More recent incarnations are at v8, including a PublishData version that can be => https://github.com/genenetwork/genenetwork2/tree/testing/scripts/maintenance +Note that the locations are on space: + +``` +cd /mount/space2/lily-clone/acenteno/GN-Data +ls -l +python QTL_Reaper_v8_space_good.py 116 +-- +python UPDATE_Mean_MySQL_tab.py +cd /mount/space2/lily-clone/gnshare/gn/web/webqtl/maintainance +ls -l +python QTL_Reaper_cal_lrs.py 7 +``` + The first task is to prepare an update script that can run a set at a time and compute GEMMA output (instead of reaper). The script first fetches inbredsets -- cgit v1.2.3