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authorPjotr Prins2021-09-15 06:12:57 -0500
committerPjotr Prins2021-09-15 06:12:57 -0500
commitc9a8663ee8b5bb7e2dcda6d443c07f32e977f95a (patch)
tree72fdd6e166c7ebc914744fc0f400598e1a34464a /issues
parentfeaaf31062a77b986792a21b9df3cd617611fda4 (diff)
downloadgn-gemtext-c9a8663ee8b5bb7e2dcda6d443c07f32e977f95a.tar.gz
GN1
Diffstat (limited to 'issues')
-rw-r--r--issues/genenetwork1/gn1-mapping-broken.gmi19
-rw-r--r--issues/genenetwork1/gn1-slowness.gmi17
2 files changed, 36 insertions, 0 deletions
diff --git a/issues/genenetwork1/gn1-mapping-broken.gmi b/issues/genenetwork1/gn1-mapping-broken.gmi
new file mode 100644
index 0000000..6a32053
--- /dev/null
+++ b/issues/genenetwork1/gn1-mapping-broken.gmi
@@ -0,0 +1,19 @@
+# Marker mapping
+
+Marker regression is broken with
+
+```
+Traceback (most recent call last):
+ File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 170, in ?
+ page = MarkerRegressionPage.MarkerRegressionPage(fd)
+ File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 203, in __init__
+ resultstable,tblobj,bottomInfo = self.GenReport(ChrNameOrderIdDict,fd, _genotype, _strains, _vals, _vars)
+ File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 438, in GenReport
+ qtlresults = _genotype.regression(strains = _strains, trait = _vals)
+AttributeError: 'genotype' object has no attribute 'regression'
+```
+
+## Tags
+
+* assigned: zachs, pjotrp
+* bug
diff --git a/issues/genenetwork1/gn1-slowness.gmi b/issues/genenetwork1/gn1-slowness.gmi
new file mode 100644
index 0000000..d632f7c
--- /dev/null
+++ b/issues/genenetwork1/gn1-slowness.gmi
@@ -0,0 +1,17 @@
+# GN1 Slowness
+
+GN1 needs to clean up the following
+
+```
+GNRoot="/gnshare/gn"
+find $GNRoot/web/tmp -mmin +100 -exec rm -rfv {} \;
+find $GNRoot/web/image -mmin +100 -exec rm -rfv {} \;
+mkdir -p $GNRoot/web/tmp
+mkdir -p $GNRoot/web/image
+```
+
+Note that the -delete switch is much faster than -exec, so
+
+```
+find $GNRoot/web/image -mmin +100 -delete
+```