From c9a8663ee8b5bb7e2dcda6d443c07f32e977f95a Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 15 Sep 2021 06:12:57 -0500
Subject: GN1

---
 issues/genenetwork1/gn1-mapping-broken.gmi | 19 +++++++++++++++++++
 issues/genenetwork1/gn1-slowness.gmi       | 17 +++++++++++++++++
 2 files changed, 36 insertions(+)
 create mode 100644 issues/genenetwork1/gn1-mapping-broken.gmi
 create mode 100644 issues/genenetwork1/gn1-slowness.gmi

(limited to 'issues')

diff --git a/issues/genenetwork1/gn1-mapping-broken.gmi b/issues/genenetwork1/gn1-mapping-broken.gmi
new file mode 100644
index 0000000..6a32053
--- /dev/null
+++ b/issues/genenetwork1/gn1-mapping-broken.gmi
@@ -0,0 +1,19 @@
+# Marker mapping
+
+Marker regression is broken with
+
+```
+Traceback (most recent call last):
+  File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 170, in ?
+    page = MarkerRegressionPage.MarkerRegressionPage(fd)
+  File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 203, in __init__
+    resultstable,tblobj,bottomInfo  = self.GenReport(ChrNameOrderIdDict,fd, _genotype, _strains, _vals, _vars)
+  File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 438, in GenReport
+    qtlresults = _genotype.regression(strains = _strains, trait = _vals)
+AttributeError: 'genotype' object has no attribute 'regression'
+```
+
+## Tags
+
+* assigned: zachs, pjotrp
+* bug
diff --git a/issues/genenetwork1/gn1-slowness.gmi b/issues/genenetwork1/gn1-slowness.gmi
new file mode 100644
index 0000000..d632f7c
--- /dev/null
+++ b/issues/genenetwork1/gn1-slowness.gmi
@@ -0,0 +1,17 @@
+# GN1 Slowness
+
+GN1 needs to clean up the following
+
+```
+GNRoot="/gnshare/gn"
+find $GNRoot/web/tmp    -mmin +100 -exec rm -rfv {} \;
+find $GNRoot/web/image  -mmin +100 -exec rm -rfv {} \;
+mkdir -p $GNRoot/web/tmp
+mkdir -p $GNRoot/web/image
+```
+
+Note that the -delete switch is much faster than -exec, so
+
+```
+find $GNRoot/web/image  -mmin +100 -delete
+```
-- 
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