diff options
| author | zsloan | 2022-10-17 13:11:05 -0500 |
|---|---|---|
| committer | GitHub | 2022-10-17 13:11:05 -0500 |
| commit | 85b455965119768db0e6480836acaae9e7be8d5c (patch) | |
| tree | 2b7b69e1b16f50aa62605e41007dfb4bd450da4f /issues/correlation-missing-file.gmi | |
| parent | 8b758d38eefd93f03658d517e06e3bcb0e95d356 (diff) | |
| download | gn-gemtext-85b455965119768db0e6480836acaae9e7be8d5c.tar.gz | |
Create correlation-missing-file.gmi
Diffstat (limited to 'issues/correlation-missing-file.gmi')
| -rw-r--r-- | issues/correlation-missing-file.gmi | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/issues/correlation-missing-file.gmi b/issues/correlation-missing-file.gmi new file mode 100644 index 0000000..c12be12 --- /dev/null +++ b/issues/correlation-missing-file.gmi @@ -0,0 +1,12 @@ +# Correlations fail for at least some ProbeSet datasets (as the target dataset) + +## How to reproduce + +- https://genenetwork.org/show_trait?trait_id=P40630_SWEEQMAEVGR_2&dataset=EPFL-ETHZ-BXD-LivProtCD-HF-1119 +- Use the default dataset for correlation (the same as the trait) +- You should get the following error: + +GeneNetwork tux01:gene:2.11-rc2-gn_20221013-4eb4beafd + [Errno 2] No such file or directory: '/home/gn2/production/tmp/gn2/gn2/ProbeSetFreezeId_886_EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)' (error) + +This obviously has something to do with the sample data files, though not sure what yet. |