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| author | Rob Williams | 2022-04-18 13:41:15 -0500 |
|---|---|---|
| committer | GitHub | 2022-04-18 13:41:15 -0500 |
| commit | e07e5e26a55e613c444d0c9b3fb2cea21011b194 (patch) | |
| tree | de8fe5143afd67b09b40767f8fadeb2d1fb70014 | |
| parent | 058f21ffeea4009cb6224f0c3f2ef6d7e10524a9 (diff) | |
| download | gn-gemtext-e07e5e26a55e613c444d0c9b3fb2cea21011b194.tar.gz | |
Create Effect size for GEMMA is a MUST
| -rw-r--r-- | issues/Effect size for GEMMA is a MUST | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/issues/Effect size for GEMMA is a MUST b/issues/Effect size for GEMMA is a MUST new file mode 100644 index 0000000..973e21a --- /dev/null +++ b/issues/Effect size for GEMMA is a MUST @@ -0,0 +1,8 @@ +To: @Zach, @Pjotr +From: robwwilliams +Regarding: Getting a readout of effect size and polarity of effect from GEMMA +Request Type: New feature for GEMMA, User requires these data + +Main Message: Let's Just Do It. Can be done as a kludge. Just plot the beta of the regression equation of the SNP status (ususally two or three states codes as 0, 1, 2 or -1,0, +1) against the phenotype. +The slope is roughly the effect size. This is good enough for most users. The only got-you is slight inflation of due to kinship structure and the Beavis effect when the sample size is low. +QUESTION—can I upload an image from Amelie Baud's talk on effect size? |