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| author | Alexander_Kabui | 2025-01-08 18:27:03 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2025-01-08 18:27:03 +0300 |
| commit | 6b176fc1c54b53358a1954c594cc85eba595fe60 (patch) | |
| tree | d463521193c855b8d71e70172396b78df71a8ec1 | |
| parent | dc1b090446a508956106e0e492423f6e8b64a753 (diff) | |
| download | gn-gemtext-6b176fc1c54b53358a1954c594cc85eba595fe60.tar.gz | |
fix todos list syntax.
| -rw-r--r-- | issues/fix-rqtl-rm-bug.gmi | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/issues/fix-rqtl-rm-bug.gmi b/issues/fix-rqtl-rm-bug.gmi index 8486edb..2809b17 100644 --- a/issues/fix-rqtl-rm-bug.gmi +++ b/issues/fix-rqtl-rm-bug.gmi @@ -11,7 +11,7 @@ For QTL analysis, we invoke the `rqtl` script as an external process through Python's `subprocess` module. For reference, see the `rqtl_wrapper.R` script: -=> [GeneNetwork3 rqtl_wrapper.R](https://github.com/genenetwork/genenetwork3/blob/main/scripts/rqtl_wrapper.R) +=> https://github.com/genenetwork/genenetwork3/blob/main/scripts/rqtl_wrapper.R The issue is that, upon analyzing the logs for `rqtl`, we see that an `rm` command is unexpectedly invoked: @@ -89,5 +89,7 @@ def run_process(cmd, output_file, run_id): * [x] We simulated invoking a system command within the `rqtl` script, but the error does not match the observed issue. ## TODO -- [ ] Test in a similar environment to the CD environment to replicate the issue. -- [ ] Investigate the internals of the QTL library for any unintended `rm` invocation. + +* [ ] Test in a similar environment to the CD environment to replicate the issue. + +* [ ] Investigate the internals of the QTL library for any unintended `rm` invocation. |