From 6b176fc1c54b53358a1954c594cc85eba595fe60 Mon Sep 17 00:00:00 2001 From: Alexander_Kabui Date: Wed, 8 Jan 2025 18:27:03 +0300 Subject: fix todos list syntax. --- issues/fix-rqtl-rm-bug.gmi | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/issues/fix-rqtl-rm-bug.gmi b/issues/fix-rqtl-rm-bug.gmi index 8486edb..2809b17 100644 --- a/issues/fix-rqtl-rm-bug.gmi +++ b/issues/fix-rqtl-rm-bug.gmi @@ -11,7 +11,7 @@ For QTL analysis, we invoke the `rqtl` script as an external process through Python's `subprocess` module. For reference, see the `rqtl_wrapper.R` script: -=> [GeneNetwork3 rqtl_wrapper.R](https://github.com/genenetwork/genenetwork3/blob/main/scripts/rqtl_wrapper.R) +=> https://github.com/genenetwork/genenetwork3/blob/main/scripts/rqtl_wrapper.R The issue is that, upon analyzing the logs for `rqtl`, we see that an `rm` command is unexpectedly invoked: @@ -89,5 +89,7 @@ def run_process(cmd, output_file, run_id): * [x] We simulated invoking a system command within the `rqtl` script, but the error does not match the observed issue. ## TODO -- [ ] Test in a similar environment to the CD environment to replicate the issue. -- [ ] Investigate the internals of the QTL library for any unintended `rm` invocation. + +* [ ] Test in a similar environment to the CD environment to replicate the issue. + +* [ ] Investigate the internals of the QTL library for any unintended `rm` invocation. -- cgit v1.2.3